[HTML][HTML] Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis

L Zhang, C He, Y Lai, Y Wang, L Kang, A Liu, C Lan… - Genome Biology, 2023 - Springer
Background Homoeologs are defined as homologous genes resulting from allopolyploidy.
Bread wheat, Triticum aestivum, is an allohexaploid species with many homoeologs …

The transcriptional landscape of polyploid wheat

RH Ramírez-González, P Borrill, D Lang… - Science, 2018 - science.org
INTRODUCTION Polyploidy, arising from whole-genome duplication or interspecific
hybridization, is ubiquitous across the plant and fungal kingdoms. The presence of highly …

[HTML][HTML] Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat

LJ Leach, EJ Belfield, C Jiang, C Brown, A Mithani… - BMC genomics, 2014 - Springer
Abstract Background Bread wheat (Triticum aestivum) has a large, complex and hexaploid
genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat …

Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA‐sequencing

X Wang, H Zhang, Y Li, Z Zhang, L Li, B Liu - New Phytologist, 2016 - Wiley Online Library
Allopolyploidization has occurred frequently within the Triticum–Aegilops complex which
provides a suitable system to investigate how allopolyploidization shapes the expression …

The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias

JJ Powell, TL Fitzgerald, J Stiller… - Plant biotechnology …, 2017 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is an allopolyploid species containing three ancestral
genomes. Therefore, three homoeologous copies exist for the majority of genes in the wheat …

Genome interplay in the grain transcriptome of hexaploid bread wheat

M Pfeifer, KG Kugler, SR Sandve, B Zhan, H Rudi… - Science, 2014 - science.org
Allohexaploid bread wheat (Triticum aestivum L.) provides approximately 20% of calories
consumed by humans. Lack of genome sequence for the three homeologous and highly …

[HTML][HTML] The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements

Z Li, M Wang, K Lin, Y Xie, J Guo, L Ye, Y Zhuang… - Genome biology, 2019 - Springer
Background Bread wheat is an allohexaploid species with a 16-Gb genome that has large
intergenic regions, which presents a big challenge for pinpointing regulatory elements and …

[HTML][HTML] 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize

Y Sun, L Dong, Y Zhang, D Lin, W Xu, C Ke, L Han… - Genome biology, 2020 - Springer
Background Maize ears and tassels are two separate types of inflorescence which are
initiated by similar developmental processes but gradually develop distinct architectures …

[HTML][HTML] WheatExp: an RNA-seq expression database for polyploid wheat

S Pearce, H Vazquez-Gross, SY Herin, D Hane… - BMC plant biology, 2015 - Springer
Background For functional genomics studies, it is important to understand the dynamic
expression profiles of transcribed genes in different tissues, stages of development and in …

[HTML][HTML] Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation

L Pei, X Huang, Z Liu, X Tian, J You, J Li, DD Fang… - Genome Biology, 2022 - Springer
Background Despite remarkable advances in our knowledge of epigenetically mediated
transcriptional programming of cell differentiation in plants, little is known about chromatin …