[HTML][HTML] Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis
L Zhang, C He, Y Lai, Y Wang, L Kang, A Liu, C Lan… - Genome Biology, 2023 - Springer
Background Homoeologs are defined as homologous genes resulting from allopolyploidy.
Bread wheat, Triticum aestivum, is an allohexaploid species with many homoeologs …
Bread wheat, Triticum aestivum, is an allohexaploid species with many homoeologs …
The transcriptional landscape of polyploid wheat
INTRODUCTION Polyploidy, arising from whole-genome duplication or interspecific
hybridization, is ubiquitous across the plant and fungal kingdoms. The presence of highly …
hybridization, is ubiquitous across the plant and fungal kingdoms. The presence of highly …
[HTML][HTML] Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
LJ Leach, EJ Belfield, C Jiang, C Brown, A Mithani… - BMC genomics, 2014 - Springer
Abstract Background Bread wheat (Triticum aestivum) has a large, complex and hexaploid
genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat …
genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat …
Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA‐sequencing
Allopolyploidization has occurred frequently within the Triticum–Aegilops complex which
provides a suitable system to investigate how allopolyploidization shapes the expression …
provides a suitable system to investigate how allopolyploidization shapes the expression …
The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias
JJ Powell, TL Fitzgerald, J Stiller… - Plant biotechnology …, 2017 - Wiley Online Library
Bread wheat (Triticum aestivum L.) is an allopolyploid species containing three ancestral
genomes. Therefore, three homoeologous copies exist for the majority of genes in the wheat …
genomes. Therefore, three homoeologous copies exist for the majority of genes in the wheat …
Genome interplay in the grain transcriptome of hexaploid bread wheat
Allohexaploid bread wheat (Triticum aestivum L.) provides approximately 20% of calories
consumed by humans. Lack of genome sequence for the three homeologous and highly …
consumed by humans. Lack of genome sequence for the three homeologous and highly …
[HTML][HTML] The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements
Z Li, M Wang, K Lin, Y Xie, J Guo, L Ye, Y Zhuang… - Genome biology, 2019 - Springer
Background Bread wheat is an allohexaploid species with a 16-Gb genome that has large
intergenic regions, which presents a big challenge for pinpointing regulatory elements and …
intergenic regions, which presents a big challenge for pinpointing regulatory elements and …
[HTML][HTML] 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize
Y Sun, L Dong, Y Zhang, D Lin, W Xu, C Ke, L Han… - Genome biology, 2020 - Springer
Background Maize ears and tassels are two separate types of inflorescence which are
initiated by similar developmental processes but gradually develop distinct architectures …
initiated by similar developmental processes but gradually develop distinct architectures …
[HTML][HTML] WheatExp: an RNA-seq expression database for polyploid wheat
S Pearce, H Vazquez-Gross, SY Herin, D Hane… - BMC plant biology, 2015 - Springer
Background For functional genomics studies, it is important to understand the dynamic
expression profiles of transcribed genes in different tissues, stages of development and in …
expression profiles of transcribed genes in different tissues, stages of development and in …
[HTML][HTML] Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
L Pei, X Huang, Z Liu, X Tian, J You, J Li, DD Fang… - Genome Biology, 2022 - Springer
Background Despite remarkable advances in our knowledge of epigenetically mediated
transcriptional programming of cell differentiation in plants, little is known about chromatin …
transcriptional programming of cell differentiation in plants, little is known about chromatin …