Analysis of yield and oil from a series of canola breeding trials. Part I. Fitting factor analytic mixed models with pedigree information

CP Beeck, WA Cowling, AB Smith, BR Cullis - Genome, 2010 - cdnsciencepub.com
In this paper multiplicative mixed models have been used for the analysis of multi-
environment trial (MET) data for canola oil and grain yield. Information on pedigrees has …

Partial least squares regression, support vector machine regression, and transcriptome-based distances for prediction of maize hybrid performance with gene …

J Fu, KC Falke, A Thiemann, TA Schrag… - Theoretical and applied …, 2012 - Springer
The performance of hybrids can be predicted with gene expression data from their parental
inbred lines. Implementing such prediction approaches in breeding programs promises to …

Multi-omics assists genomic prediction of maize yield with machine learning approaches

C Wu, J Luo, Y Xiao - Molecular Breeding, 2024 - Springer
With the improvement of high-throughput technologies in recent years, large multi-
dimensional plant omics data have been produced, and big-data-driven yield prediction …

[HTML][HTML] Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations

H Hu, MT Campbell, TH Yeats, X Zheng… - Theoretical and Applied …, 2021 - Springer
Key message Integration of multi-omics data improved prediction accuracies of oat
agronomic and seed nutritional traits in multi-environment trials and distantly related …

Genomic prediction for complex traits across multiples harvests in alfalfa (Medicago sativa L.) is enhanced by enviromics

CCF Filho, MHML Andrade, JAR Nunes… - The Plant …, 2023 - Wiley Online Library
Breeding for dry matter yield and persistence in alfalfa (Medicago sativa L.) can take several
years as these traits must be evaluated under multiple harvests. Therefore, genotype‐by …

Genomic prediction of sunflower hybrid performance

JC Reif, Y Zhao, T Würschum, M Gowda… - Plant …, 2013 - Wiley Online Library
Predicting single‐cross performance is of high importance to improve the efficiency of
sunflower (H elianthus annuus L.) hybrid breeding programmes. We used experimental data …

Transcriptome‐based prediction of hybrid performance with unbalanced data from a maize breeding programme

C Zenke‐Philippi, M Frisch, A Thiemann… - Plant …, 2017 - Wiley Online Library
Abstract mRNA transcription profiles are an alternative to DNA markers for predicting hybrid
performance. Our objective was to investigate their prediction accuracy in an unbalanced …

[HTML][HTML] Comparison of sequencing-based and array-based genotyping platforms for genomic prediction of maize hybrid performance

G Yu, Y Cui, Y Jiao, K Zhou, X Wang, W Yang, Y Xu… - The Crop Journal, 2023 - Elsevier
Genomic selection (GS) is a powerful tool for improving genetic gain in maize breeding.
However, its routine application in large-scale breeding pipelines is limited by the high cost …

Omics-based hybrid prediction in maize

M Westhues, TA Schrag, C Heuer, G Thaller… - Theoretical and applied …, 2017 - Springer
Key message Complementing genomic data with other “omics” predictors can increase the
probability of success for predicting the best hybrid combinations using complex agronomic …

Analysis of yield and oil from a series of canola breeding trials. Part II. Exploring variety by environment interaction using factor analysis

BR Cullis, AB Smith, CP Beeck, WA Cowling - Genome, 2010 - cdnsciencepub.com
Exploring and exploiting variety by environment (V× E) interaction is one of the major
challenges facing plant breeders. In paper I of this series, we presented an approach to …