An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
M Braaksma, ES Martens-Uzunova, PJ Punt… - BMC genomics, 2010 - Springer
Background The ecological niche occupied by a fungal species, its pathogenicity and its
usefulness as a microbial cell factory to a large degree depends on its secretome. Protein …
usefulness as a microbial cell factory to a large degree depends on its secretome. Protein …
Compositions of fungal secretomes indicate a greater impact of phylogenetic history than lifestyle adaptation
JJ Krijger, MR Thon, HB Deising, SGR Wirsel - BMC genomics, 2014 - Springer
Background Since the first fungal genome sequences became available, investigators have
been employing comparative genomics to understand how fungi have evolved to occupy …
been employing comparative genomics to understand how fungi have evolved to occupy …
Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae
Abstract Background The koji mold, Aspergillus oryzae is widely used for the production of
industrial enzymes due to its particularly high protein secretion capacity and ability to …
industrial enzymes due to its particularly high protein secretion capacity and ability to …
Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
The steadily increasing number of sequenced fungal and oomycete genomes has enabled
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
detailed studies of how these eukaryotic microbes infect plants and cause devastating …
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …
An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens
Fungal plant-pathogens promote infection of their hosts through the release of 'effectors'—a
broad class of cytotoxic or virulence-promoting molecules. Effectors may be recognised by …
broad class of cytotoxic or virulence-promoting molecules. Effectors may be recognised by …
The Predicted Secretome of the Plant Pathogenic Fungus Fusarium graminearum: A Refined Comparative Analysis
NA Brown, J Antoniw, KE Hammond-Kosack - PloS one, 2012 - journals.plos.org
The fungus Fusarium graminearum forms an intimate association with the host species
wheat whilst infecting the floral tissues at anthesis. During the prolonged latent period of …
wheat whilst infecting the floral tissues at anthesis. During the prolonged latent period of …
Computational prediction of effector proteins in fungi: opportunities and challenges
Effector proteins are mostly secretory proteins that stimulate plant infection by manipulating
the host response. Identifying fungal effector proteins and understanding their function is of …
the host response. Identifying fungal effector proteins and understanding their function is of …
Fungal secretome profile categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium
Fungi secrete an array of carbohydrate-active enzymes (CAZymes), reflecting their
specialized habitat-related substrate utilization. Despite its importance for fitness, enzyme …
specialized habitat-related substrate utilization. Despite its importance for fitness, enzyme …
Defining the Predicted Protein Secretome of the Fungal Wheat Leaf Pathogen Mycosphaerella graminicola
A Morais do Amaral, J Antoniw, JJ Rudd… - PLoS …, 2012 - journals.plos.org
The Dothideomycete fungus Mycosphaerella graminicola is the causal agent of Septoria
tritici blotch, a devastating disease of wheat leaves that causes dramatic decreases in yield …
tritici blotch, a devastating disease of wheat leaves that causes dramatic decreases in yield …