Cross-species single-cell transcriptomics and its applications in evolutionary and translational research

D Keitley - 2024 - repository.cam.ac.uk
Single-cell transcriptomics has emerged as a powerful technology to characterise gene
expression within individual cells. Over the last 5 years, as the technology has matured …

Computational reconstruction of mouse development using single cell transcriptomics

I Imaz Rosshandler - 2021 - repository.cam.ac.uk
Single cell transcriptomics has significantly contributed to our understanding of cell types
across species, organs and developmental processes. The rapid development of …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

[HTML][HTML] Cross-species analysis of single-cell transcriptomic data

MER Shafer - Frontiers in cell and developmental biology, 2019 - frontiersin.org
The ability to profile hundreds of thousands to millions of single cells using scRNA-
sequencing has revolutionized the fields of cell and developmental biology, providing …

Cellular diversity and lineage trajectory: insights from mouse single cell transcriptomes

PPL Tam, JWK Ho - Development, 2020 - journals.biologists.com
Single cell RNA-sequencing (scRNA-seq) technology has matured to the point that it is
possible to generate large single cell atlases of developing mouse embryos. These atlases …

Single cell analyses of development in the modern era

AM Klein, B Treutlein - Development, 2019 - journals.biologists.com
Single cell analyses encompass multiple approaches that, we suggest, can be summarized
by two unifying goals: to explain the cellular composition of tissues; and to characterize the …

Untangling early embryo development using single cell genomics

R Alberio - Theriogenology, 2020 - Elsevier
The zygote undergoes five cell divisions prior to the first signs of lineage segregation.
Blastocyst formation requires segregation of the trophectoderm, needed for implantation …

How single-cell genomics is changing evolutionary and developmental biology

JC Marioni, D Arendt - Annual review of cell and developmental …, 2017 - annualreviews.org
The recent flood of single-cell data not only boosts our knowledge of cells and cell types, but
also provides new insight into development and evolution from a cellular perspective. For …

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

M Plass, J Solana, FA Wolf, S Ayoub, A Misios… - Science, 2018 - science.org
INTRODUCTION Understanding the differentiation of stem cells into the vast amount of cell
types that form the human body is a central problem of basic and medical science. The …

Understanding development and stem cells using single cell-based analyses of gene expression

P Kumar, Y Tan, P Cahan - Development, 2017 - journals.biologists.com
In recent years, genome-wide profiling approaches have begun to uncover the molecular
programs that drive developmental processes. In particular, technical advances that enable …