Genome plasticity: insertion sequence elements, transposons and integrons, and DNA rearrangement

PM Bennett - … , proteomics, and clinical bacteriology: methods and …, 2004 - Springer
Living organisms are defined by the genes they possess. Control of expression of this gene
set, both temporally and in response to the environment, determines whether an organism …

Mechanisms of horizontal gene transfer and DNA recombination

GW Blakely - Molecular medical microbiology, 2024 - Elsevier
Comparative genomics is revealing extensive diversity within many bacterial species. The
pan-genome of a species is composed of core genes present in all strains and dispensable …

Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species

S Domingues, K Harms, WF Fricke, PJ Johnsen… - 2012 - journals.plos.org
We have investigated to what extent natural transformation acting on free DNA substrates
can facilitate transfer of mobile elements including transposons, integrons and/or gene …

The impact of insertion sequences on bacterial genome plasticity and adaptability

J Vandecraen, M Chandler, A Aertsen… - Critical reviews in …, 2017 - Taylor & Francis
Transposable elements (TE), small mobile genetic elements unable to exist independently
of the host genome, were initially believed to be exclusively deleterious genomic parasites …

The potential of integrons and connected programmed rearrangements for mediating horizontal gene transfer.

L Sundström - APMIS. Supplementum, 1998 - europepmc.org
Site-specific recombination of integrons, mediates transfer of single genes in small genomes
and plasmids. Recent data suggest that new genes are recruited to the cassettes--the units …

Various pathways leading to the acquisition of antibiotic resistance by natural transformation

S Domingues, KM Nielsen, GJ da Silva - Mobile genetic elements, 2012 - Taylor & Francis
Natural transformation can lead to exchange of DNA between taxonomically diverse
bacteria. In the case of chromosomal DNA, homology-based recombination with the …

Transposon insertion sequencing, a global measure of gene function

T van Opijnen, HL Levin - Annual review of genetics, 2020 - annualreviews.org
The goal of genomics and systems biology is to understand how complex systems of factors
assemble into pathways and structures that combine to form living organisms. Great …

The integron: adaptation on demand

JA Escudero, C Loot, A Nivina, D Mazel - Microbiology spectrum, 2015 - Am Soc Microbiol
The integron is a powerful system which, by capturing, stockpiling, and rearranging new
functions carried by gene encoding cassettes, confers upon bacteria a rapid adaptation …

Genome plasticity in Enterobacteriaceae

W Brunder, H Karch - International journal of medical microbiology, 2000 - Elsevier
The comparative analysis of multiple representatives of the genomes of particular species
are leading us away from a view of bacterial genomes as static, monolithic structures …

Genomic islands are dynamic, ancient integrative elements in bacterial evolution

EF Boyd, S Almagro-Moreno, MA Parent - Trends in microbiology, 2009 - cell.com
Acquisition of genomic islands plays a central part in bacterial evolution as a mechanism of
diversification and adaptation. Genomic islands are non-self-mobilizing integrative and …