Molecular modeling for artificial metalloenzyme design and optimization

L Alonso-Cotchico, J Rodrı́guez-Guerra… - Accounts of Chemical …, 2020 - ACS Publications
Conspectus Artificial metalloenzymes (ArMs) are obtained by inserting homogeneous
catalysts into biological scaffolds and are among the most promising strategies in the quest …

Directed evolution of enzyme stability

VGH Eijsink, S Gåseidnes, TV Borchert… - Biomolecular …, 2005 - Elsevier
Modern enzyme development relies to an increasing extent on strategies based on diversity
generation followed by screening for variants with optimised properties. In principle, these …

The challenge of predicting distal active site mutations in computational enzyme design

S Osuna - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
Many computational enzyme design approaches have been developed in recent years that
focus on a reduced set of key enzymatic features. Initial protocols mostly focused on the …

Computational design of synthetic enzymes

V Vaissier Welborn, T Head-Gordon - Chemical reviews, 2018 - ACS Publications
We review the standard model for de novo computational design of enzymes, which
primarily focuses on the development of an active-site geometry, composed of protein …

Building enzymes through design and evolution

EJ Hossack, FJ Hardy, AP Green - ACS Catalysis, 2023 - ACS Publications
Designing efficient enzymes is a formidable challenge at the forefront of modern
biocatalysis. Here, we review recent developments in the field and illustrate how the …

Enzyme engineering and its industrial applications

I Victorino da Silva Amatto… - Biotechnology and …, 2022 - Wiley Online Library
Recently, there has been an increase in the demand for enzymes with modified activity,
specificity, and stability. Enzyme engineering is an important tool to meet the demand for …

Engineering enzymes for biocatalysis

PA Dalby - Recent patents on biotechnology, 2007 - ingentaconnect.com
Protein engineering techniques have been available for over two decades beginning with
the development of methods for genetic engineering. Since that time, the engineering of …

[HTML][HTML] An exciting but challenging road ahead for computational enzyme design

D Baker - Protein science: a publication of the Protein Society, 2010 - ncbi.nlm.nih.gov
Recent work has demonstrated that computational enzyme design can generate active
catalysts. 1–3 Although the progress is encouraging, the future will be brighter for this new …

Web-based tools for computational enzyme design

SM Marques, J Planas-Iglesias, J Damborsky - Current Opinion in Structural …, 2021 - Elsevier
Highlights•Enzymes are increasingly used in technological applications but often require
prior optimization.•Computational tools save time and effort in protein engineering …

Enzyme engineering: reaching the maximal catalytic efficiency peak

M Goldsmith, DS Tawfik - Current opinion in structural biology, 2017 - Elsevier
Highlights•Optimization plateaus are common when engineering enzymes for higher
catalytic efficiency.•These plateaus relate to fundamental properties of evolutionary fitness …