[HTML][HTML] High-level classification of the Fungi and a tool for evolutionary ecological analyses

L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram… - Fungal diversity, 2018 - Springer
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …

[HTML][HTML] Dating the diversification of the major lineages of Ascomycota (Fungi)

M Prieto, M Wedin - PloS one, 2013 - journals.plos.org
Establishing the dates for the origin and main diversification events in the phylogeny of
Ascomycota is among the most crucial remaining goals in understanding the evolution of …

Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas

J Sugiyama, K Hosaka, SO Suh - Mycologia, 2006 - Taylor & Francis
The early diverging Ascomycota lineage, detected primarily from nSSU rDNA sequence-
based phylogenetic analyses, includes enigmatic key taxa important to an understanding of …

Fungal species concepts in the genomics era

J Xu - Genome, 2020 - cdnsciencepub.com
The 140 000 or so fungal species reported so far are heterogeneously defined based on
varying criteria such as morphological, physiological, mating, and (or) molecular features …

[HTML][HTML] The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding

C Phukhamsakda, RH Nilsson, CS Bhunjun… - Fungal diversity, 2022 - Springer
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …

A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?

AE Arnold, J Miadlikowska, KL Higgins… - Systematic …, 2009 - academic.oup.com
Fungi associated with photosynthetic organisms are major determinants of terrestrial
biomass, nutrient cycling, and ecosystem productivity from the poles to the equator. Whereas …

A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective

RL Zhao, GJ Li, S Sánchez-Ramírez, M Stata, ZL Yang… - Fungal Diversity, 2017 - Springer
In this paper, we provide a phylogenetic overview of Basidiomycota and related phyla in
relation to ten years of DNA based phylogenetic studies since the AFTOL publications in …

Testing “Species Pair” Hypotheses: Evolutionary Processes in the Lichen-Forming Species Complex Porpidia flavocoerulescens and Porpidia melinodes

J Buschbom, GM Mueller - Molecular Biology and Evolution, 2006 - academic.oup.com
Pairs of taxa are commonly found in lichen-forming ascomycetes that differ primarily in their
reproductive modes: one taxon reproduces sexually, the other vegetatively. The evolutionary …

Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny

YJ Liu, BD Hall - Proceedings of the National Academy of …, 2004 - National Acad Sciences
The mode of evolution of the biologically diverse forms of ascomycetes is not well
understood, largely because the descent relationships remain unresolved. By using …

Outline of Ascomycota: 2017

NN Wijayawardene, KD Hyde, HT Lumbsch, JK Liu… - Fungal diversity, 2018 - Springer
Taxonomic placement of genera have been changing rapidly as taxonomists widely use
DNA sequence data in phylogenetic and evolutionary studies. It is essential to update …