CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
M Efremova, M Vento-Tormo, SA Teichmann… - Nature protocols, 2020 - nature.com
Cell–cell communication mediated by ligand–receptor complexes is critical to coordinating
diverse biological processes, such as development, differentiation and inflammation. To …
diverse biological processes, such as development, differentiation and inflammation. To …
Dissection of intercellular communication using the transcriptome-based framework ICELLNET
F Noël, L Massenet-Regad, I Carmi-Levy… - Nature …, 2021 - nature.com
Cell-to-cell communication can be inferred from ligand–receptor expression in cell
transcriptomic datasets. However, important challenges remain: global integration of cell-to …
transcriptomic datasets. However, important challenges remain: global integration of cell-to …
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
The growing availability of single-cell data, especially transcriptomics, has sparked an
increased interest in the inference of cell-cell communication. Many computational tools …
increased interest in the inference of cell-cell communication. Many computational tools …
Deciphering cell–cell interactions and communication from gene expression
E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …
functions. When cells do not properly interact or improperly decode molecular messages …
CellTalkDB: a manually curated database of ligand–receptor interactions in humans and mice
Cell–cell communications in multicellular organisms generally involve secreted ligand–
receptor (LR) interactions, which is vital for various biological phenomena. Recent …
receptor (LR) interactions, which is vital for various biological phenomena. Recent …
Predicting cell-to-cell communication networks using NATMI
Abstract Development of high throughput single-cell sequencing technologies has made it
cost-effective to profile thousands of cells from diverse samples containing multiple cell …
cost-effective to profile thousands of cells from diverse samples containing multiple cell …
The diversification of methods for studying cell–cell interactions and communication
No cell lives in a vacuum, and the molecular interactions between cells define most
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …
Inference and analysis of cell-cell communication using CellChat
Understanding global communications among cells requires accurate representation of cell-
cell signaling links and effective systems-level analyses of those links. We construct a …
cell signaling links and effective systems-level analyses of those links. We construct a …
CellChat for systematic analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Recent advances in single-cell sequencing technologies offer an opportunity to explore cell-
cell communication in tissues systematically and with reduced bias. A key challenge is the …
cell communication in tissues systematically and with reduced bias. A key challenge is the …
New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data
For multicellular organisms, cell-cell communication is essential to numerous biological
processes. Drawing upon the latest development of single-cell RNA-sequencing (scRNA …
processes. Drawing upon the latest development of single-cell RNA-sequencing (scRNA …