Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites
Ubiquitin (Ub) is a small protein that consists of 76 amino acids about 8.5 kDa. In ubiquitin
conjugation, the ubiquitin is majorly conjugated on the lysine residue of protein by Ub …
conjugation, the ubiquitin is majorly conjugated on the lysine residue of protein by Ub …
A subset of ubiquitin-conjugating enzymes is essential for plant immunity
Of the three classes of enzymes involved in ubiquitination, ubiquitin-conjugating enzymes
(E2) have been often incorrectly considered to play merely an auxiliary role in the process …
(E2) have been often incorrectly considered to play merely an auxiliary role in the process …
[HTML][HTML] Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
All seven lysine residues in ubiquitin contribute to the synthesis of polyubiquitin chains on
protein substrates. Whereas K48-linked chains are well established as mediators of …
protein substrates. Whereas K48-linked chains are well established as mediators of …
Comprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat
N Zhang, L Zhang, C Shi, Q Tian, G Lv, Y Wang… - Scientific Reports, 2017 - nature.com
Protein ubiquitination, which is a major post-translational modifications that occurs in
eukaryotic cells, is involved in diverse biological processes. To date, large-scale profiling of …
eukaryotic cells, is involved in diverse biological processes. To date, large-scale profiling of …
A label-free quantitative proteomics strategy to identify E3 ubiquitin ligase substrates targeted to proteasome degradation
CF Burande, ML Heuze, I Lamsoul, B Monsarrat… - Molecular & Cellular …, 2009 - ASBMB
The ubiquitin-proteasome system is a central mechanism for controlled proteolysis that
regulates numerous cellular processes in eukaryotes. As such, defects in this system can …
regulates numerous cellular processes in eukaryotes. As such, defects in this system can …
Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa)
YJ Hur, YB Yi, JH Lee, YS Chung, HW Jung… - Molecular biology …, 2012 - Springer
The ubiquitin-26S proteasome system is important in the quality control of intracellular
proteins. The ubiquitin-26S proteasome system includes the E1 (ubiquitin activating), E2 …
proteins. The ubiquitin-26S proteasome system includes the E1 (ubiquitin activating), E2 …
A cascading activity-based probe sequentially targets E1–E2–E3 ubiquitin enzymes
MPC Mulder, K Witting, I Berlin, JN Pruneda… - Nature chemical …, 2016 - nature.com
Post-translational modifications of proteins with ubiquitin (Ub) and ubiquitin-like modifiers
(Ubls), orchestrated by a cascade of specialized E1, E2 and E3 enzymes, control a wide …
(Ubls), orchestrated by a cascade of specialized E1, E2 and E3 enzymes, control a wide …
[HTML][HTML] Genomic and phenomic screens for flower related RING type ubiquitin E3 ligases in Arabidopsis
M Pavicic, K Mouhu, F Wang, M Bilicka… - Frontiers in Plant …, 2017 - frontiersin.org
Flowering time control integrates endogenous as well as environmental signals to promote
flower development. The pathways and molecular networks involved are complex and …
flower development. The pathways and molecular networks involved are complex and …
Structural insights into ADP-ribosylation of ubiquitin by Deltex family E3 ubiquitin ligases
Cellular cross-talk between ubiquitination and other posttranslational modifications
contributes to the regulation of numerous processes. One example is ADP-ribosylation of the …
contributes to the regulation of numerous processes. One example is ADP-ribosylation of the …
Plant E3 ligases and their role in abiotic stress response
R Al-Saharin, H Hellmann, S Mooney - Cells, 2022 - mdpi.com
Plants, as sessile organisms, have limited means to cope with environmental changes.
Consequently, they have developed complex regulatory systems to ameliorate abiotic …
Consequently, they have developed complex regulatory systems to ameliorate abiotic …