Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

JJ Wiens, CA Kuczynski, T Townsend… - Systematic …, 2010 - academic.oup.com
Molecular data offer great potential to resolve the phylogeny of living taxa but can molecular
data improve our understanding of relationships of fossil taxa? Simulations suggest that this …

[HTML][HTML] Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa

TW Reeder, TM Townsend, DG Mulcahy, BP Noonan… - PLOS …, 2015 - journals.plos.org
Squamate reptiles (lizards and snakes) are a pivotal group whose relationships have
become increasingly controversial. Squamates include> 9000 species, making them the …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships

FT Burbrink, FG Grazziotin, RA Pyron… - Systematic …, 2020 - academic.oup.com
Genomics is narrowing uncertainty in the phylogenetic structure for many amniote groups.
For one of the most diverse and species-rich groups, the squamate reptiles (lizards, snakes …

Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species

JJ Wiens, CR Hutter, DG Mulcahy… - Biology …, 2012 - royalsocietypublishing.org
Squamate reptiles (lizards and snakes) are one of the most diverse groups of terrestrial
vertebrates. Recent molecular analyses have suggested a very different squamate …

Congruence and conflict in the higher-level phylogenetics of squamate reptiles: an expanded phylogenomic perspective

S Singhal, TJ Colston, MR Grundler, SA Smith… - Systematic …, 2021 - academic.oup.com
Genome-scale data have the potential to clarify phylogenetic relationships across the tree of
life but have also revealed extensive gene tree conflict. This seeming paradox, whereby …

Novel approaches for phylogenetic inference from morphological data and total-evidence dating in squamate reptiles (lizards, snakes, and amphisbaenians)

RA Pyron - Systematic Biology, 2017 - academic.oup.com
Here, I combine previously underutilized models and priors to perform more biologically
realistic phylogenetic inference from morphological data, with an example from squamate …

[HTML][HTML] Squamate phylogeny, taxon sampling, and data congruence

MSY Lee - Organisms Diversity & Evolution, 2005 - Elsevier
To investigate the affinities of snakes, amphisbaenians and dibamids, the phylogenetic
relationships among the major lineages (families) of extinct and extant squamates are …

[HTML][HTML] The origin of snakes: revealing the ecology, behavior, and evolutionary history of early snakes using genomics, phenomics, and the fossil record

AY Hsiang, DJ Field, TH Webster, ADB Behlke… - BMC evolutionary …, 2015 - Springer
Background The highly derived morphology and astounding diversity of snakes has long
inspired debate regarding the ecological and evolutionary origin of both the snake total …

The squamate tree of life

TR Simões, RA Pyron - Bulletin of the Museum of Comparative Zoology, 2021 - BioOne
Squamates (lizards, snakes, and their kin such as amphisbaenians, or “worm lizards”)
represent the world's most diverse clade of terrestrial vertebrates with∼ 11,000 described …