[PDF][PDF] Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences

M Rinaldelli, E Ravera, V Calderone… - … Section D: Biological …, 2014 - journals.iucr.org
The program REFMAC5 from CCP4 was modified to allow the simultaneous use of X-ray
crystallographic data and paramagnetic NMR data (pseudocontact shifts and self-orientation …

[PDF][PDF] Overview of refinement procedures within REFMAC5: utilizing data from different sources

O Kovalevskiy, RA Nicholls, F Long… - … Section D: Structural …, 2018 - journals.iucr.org
Refinement is a process that involves bringing into agreement the structural model,
available prior knowledge and experimental data. To achieve this, the refinement procedure …

[PDF][PDF] REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use

AA Vagin, RA Steiner, AA Lebedev… - … Section D: Biological …, 2004 - journals.iucr.org
One of the most important aspects of macromolecular structure refinement is the use of prior
chemical knowledge. Bond lengths, bond angles and other chemical properties are used in …

How to tackle protein structural data from solution and solid state: an integrated approach

A Carlon, E Ravera, W Andrałojć, G Parigi… - Progress in Nuclear …, 2016 - Elsevier
Long-range NMR restraints, such as diamagnetic residual dipolar couplings and
paramagnetic data, can be used to determine 3D structures of macromolecules. They are …

[PDF][PDF] Low-resolution refinement tools in REFMAC5

RA Nicholls, F Long, GN Murshudov - … Crystallographica Section D …, 2012 - journals.iucr.org
Two aspects of low-resolution macromolecular crystal structure analysis are considered:(i)
the use of reference structures and structural units for provision of structural prior information …

[PDF][PDF] REFMAC5 for the refinement of macromolecular crystal structures

GN Murshudov, P Skubák, AA Lebedev… - … Section D: Biological …, 2011 - journals.iucr.org
This paper describes various components of the macromolecular crystallographic
refinement program REFMAC5, which is distributed as part of the CCP4 suite. REFMAC5 …

[PDF][PDF] Structure calculation, refinement and validation using CcpNmr Analysis

SP Skinner, BT Goult, RH Fogh… - … Section D: Biological …, 2015 - journals.iucr.org
CcpNmr Analysis provides a streamlined pipeline for both NMR chemical shift assignment
and structure determination of biological macromolecules. In addition, it encompasses tools …

[HTML][HTML] On the complementarity of X-ray and NMR data

A Schirò, A Carlon, G Parigi, G Murshudov… - Journal of Structural …, 2020 - Elsevier
X-ray crystallography and NMR contain complementary information for the structural
characterization of biological macromolecules. X-ray diffraction is primarily sensitive to the …

Joint X-ray/NMR structure refinement of multidomain/multisubunit systems

A Carlon, E Ravera, G Parigi, GN Murshudov… - Journal of Biomolecular …, 2019 - Springer
Data integration in structural biology has become a paradigm for the characterization of
biomolecular systems, and it is now accepted that combining different techniques can fill the …

An overview of the CCP4 project in protein crystallography: an example of a collaborative project

MD Winn - Journal of synchrotron radiation, 2003 - journals.iucr.org
The Collaborative Computational Project Number 4 (CCP4) was established in 1979 to
promote collaboration between UK groups writing software for protein crystallography …