[图书][B] Automated structure solution with the PHENIX suite

PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung… - 2008 - Springer
Significant time and effort are often required to solve and complete a macromolecular crystal
structure. The development of automated computational methods for the analysis, solution …

The Phenix software for automated determination of macromolecular structures

PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
X-ray crystallography is a critical tool in the study of biological systems. It is able to provide
information that has been a prerequisite to understanding the fundamentals of life. It is also a …

Recent developments for the efficient crystallographic refinement of macromolecular structures

AT Brünger, PD Adams, LM Rice - Current opinion in structural biology, 1998 - Elsevier
Macromolecular crystallographic refinement has recently been made more efficient by the
use of cross-validated maximum likelihood targets and torsion-angle molecular dynamics …

CRANK: new methods for automated macromolecular crystal structure solution

SR Ness, RAG de Graaff, JP Abrahams, NS Pannu - Structure, 2004 - cell.com
CRANK is a novel suite for automated macromolecular structure solution and uses recently
developed programs for substructure detection, refinement, and phasing. CRANK utilizes …

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems

PD Adams, D Baker, AT Brunger, R Das… - Annual review of …, 2013 - annualreviews.org
Advances in our understanding of macromolecular structure come from experimental
methods, such as X-ray crystallography, and also computational analysis of the growing …

[HTML][HTML] Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

TC Terwilliger, RW Grosse-Kunstleve… - … Section D: Biological …, 2008 - scripts.iucr.org
The PHENIX AutoBuild wizard is a highly automated tool for iterative model building,
structure refinement and density modification using RESOLVE model building, RESOLVE …

[PDF][PDF] Automated refinement of macromolecular structures at low resolution using prior information

O Kovalevskiy, RA Nicholls… - … Section D: Structural …, 2016 - journals.iucr.org
Since the ratio of the number of observations to adjustable parameters is small at low
resolution, it is necessary to use complementary information for the analysis of such data …

phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta

TC Terwilliger, F DiMaio, RJ Read, D Baker… - Journal of structural and …, 2012 - Springer
The combination of algorithms from the structure-modeling field with those of
crystallographic structure determination can broaden the range of templates that are useful …

ProteinsPlus: a web portal for structure analysis of macromolecules

R Fährrolfes, S Bietz, F Flachsenberg… - Nucleic acids …, 2017 - academic.oup.com
With currently more than 126 000 publicly available structures and an increasing growth
rate, the Protein Data Bank constitutes a rich data source for structure-driven research in …

Structural bioinformatics and its impact to biomedical science

KC Chou - Current medicinal chemistry, 2004 - ingentaconnect.com
During the last two decades, the number of sequence-known proteins has increased rapidly.
In contrast, the corresponding increment for structure-known proteins is much slower. The …