The history and disposition of transposable elements in polyploid Gossypium

G Hu, JS Hawkins, CE Grover, JF Wendel - Genome, 2010 - cdnsciencepub.com
Transposable elements (TEs) are a major component of plant genomes. It is of particular
interest to explore the potential activation of TE proliferation, especially in hybrids and …

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium

JS Hawkins, G Hu, RA Rapp, JL Grafenberg… - …, 2008 - cdnsciencepub.com
Transposable elements contribute significantly to plant genome evolution in myriad ways,
ranging from local insertional mutations to global effects exerted on genome size through …

Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors

H Cheng, G Sun, S He, W Gong, Z Peng… - Journal of integrative …, 2019 - Wiley Online Library
An allopolyploidization event formed allotetraploid Gossypium species from an A‐genome
diploid species and a D‐genome diploid species. To explore the responses of transposable …

Large-scale long terminal repeat insertions produced a significant set of novel transcripts in cotton

Y Yang, X Wen, Z Wu, K Wang, Y Zhu - Science China Life Sciences, 2023 - Springer
Genomic analysis has revealed that the 1,637-Mb Gossypium arboreum genome contains
approximately 81% transposable elements (TEs), while only 57% of the 735-Mb G. raimondii …

Intergenomic gene transfer in diploid and allopolyploid Gossypium

N Zhao, CE Grover, Z Chen, JF Wendel, J Hua - BMC plant biology, 2019 - Springer
Background Intergenomic gene transfer (IGT) between nuclear and organellar genomes is a
common phenomenon during plant evolution. Gossypium is a useful model to evaluate the …

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

JS Hawkins, HR Kim, JD Nason, RA Wing… - Genome …, 2006 - genome.cshlp.org
The DNA content of eukaryotic nuclei (C-value) varies∼ 200,000-fold, but there is only a∼
20-fold variation in the number of protein-coding genes. Hence, most C-value variation is …

Transposable elements play an important role during cotton genome evolution and fiber cell development

K Wang, G Huang, Y Zhu - Science China Life Sciences, 2016 - Springer
Transposable elements (TEs) usually occupy largest fractions of plant genome and are also
the most variable part of the structure. Although traditionally it is hallmarked as “junk and …

LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

T Zhao, X Tao, S Feng, L Wang, H Hong, W Ma… - Genome biology, 2018 - Springer
Background Interspecific hybridization and whole genome duplication are driving forces of
genomic and organism diversification. But the effect of interspecific hybridization and whole …

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

H Guo, X Wang, H Gundlach, KFX Mayer… - Genetics, 2014 - academic.oup.com
Genome duplication is thought to be central to the evolution of morphological complexity,
and some polyploids enjoy a variety of capabilities that transgress those of their diploid …

Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species

Z Liu, Y Liu, F Liu, S Zhang, X Wang, Q Lu, K Wang… - Scientific Reports, 2018 - nature.com
Long terminal repeat (LTR) retrotransposon is the most abundant DNA component and is
largely responsible for plant genome size variation. Although it has been studied in plant …