A comparative analysis of whole plastid genomes from the Apiales: expansion and contraction of the inverted repeat, mitochondrial to plastid transfer of DNA, and …

SR Downie, RK Jansen - Systematic Botany, 2015 - ingentaconnect.com
Previous mapping studies have revealed that the frequency and large size of inverted repeat
junction shifts in Apiaceae plastomes are unusual among angiosperms. To further examine …

Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives

MD Logacheva, MI Schelkunov, VY Shtratnikova… - Scientific Reports, 2016 - nature.com
Although plastid genomes of flowering plants are typically highly conserved regarding their
size, gene content and order, there are some exceptions. Ericaceae, a large and diverse …

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats

RE Timme, JV Kuehl, JL Boore… - American Journal of …, 2007 - Wiley Online Library
We have sequenced two complete chloroplast genomes in the Asteraceae, Helianthus
annuus (sunflower), and Lactuca sativa (lettuce), which belong to the distantly related …

Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes

C Lee, TA Ruhlman, RK Jansen - Genome Biology and …, 2020 - academic.oup.com
Plastid genomes (plastomes) of land plants have a conserved quadripartite structure in a
gene-dense unit genome consisting of a large inverted repeat that separates two single …

The plastid genomes of flowering plants

TA Ruhlman, RK Jansen - Chloroplast biotechnology: methods and …, 2014 - Springer
The plastid genome (plastome) has proved a valuable source of data for evaluating
evolutionary relationships among angiosperms. Through basic and applied approaches …

Plastome phylogenetics: 30 years of inferences into plant evolution

MA Gitzendanner, PS Soltis, TS Yi, DZ Li… - Advances in botanical …, 2018 - Elsevier
From restriction site analyses to whole plastid genome sequences, our understanding of
green plant (Viridiplantae;~ 500,000 extant species) evolutionary relationships over the past …

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

MM Guisinger, JV Kuehl, JL Boore… - Molecular biology and …, 2011 - academic.oup.com
Geraniaceae plastid genomes (plastomes) have experienced a remarkable number of
genomic changes. The plastomes of Erodium texanum, Geranium palmatum, and Monsonia …

Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae

MM Guisinger, TW Chumley, JV Kuehl… - Journal of Molecular …, 2010 - Springer
Plastid genomes of the grasses (Poaceae) are unusual in their organization and rates of
sequence evolution. There has been a recent surge in the availability of grass plastid …

Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes

M Wang, X Wang, J Sun, Y Wang, Y Ge, W Dong… - BMC plant biology, 2021 - Springer
Abstract Background Angelica L.(family Apiaceae) is an economically important genus
comprising ca. One hundred ten species. Angelica species are found on all continents of the …

Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there

CC Davis, Z Xi, S Mathews - BMC biology, 2014 - Springer
A study in BMC Evolutionary Biology represents the most comprehensive effort to clarify the
phylogeny of green plants using sequences from the plastid genome. This study highlights …