Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …

Genomically biased accumulation of seed storage proteins in allopolyploid cotton

G Hu, NL Houston, D Pathak, L Schmidt, JJ Thelen… - Genetics, 2011 - academic.oup.com
Allopolyploidy is an important process during plant evolution that results in the reunion of
two divergent genomes into a common nucleus. Many of the immediate as well as longer …

Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense

G Hu, J Koh, MJ Yoo, K Grupp, S Chen… - New …, 2013 - Wiley Online Library
Pima cotton (G ossypium barbadense) is widely cultivated because of its long, strong seed
trichomes ('fibers') used for premium textiles. These agronomically advanced fibers were …

Jeans, genes, and genomes: cotton as a model for studying polyploidy

JF Wendel, LE Flagel, KL Adams - Polyploidy and genome evolution, 2012 - Springer
We present an overview of the cotton genus (Gossypium) as a model for the study of
polyploidy. A synopsis of the origin and evolution of polyploid cotton is provided, offering an …

Homoeolog expression bias and expression level dominance in allopolyploid cotton

MJ Yoo, E Szadkowski, JF Wendel - Heredity, 2013 - nature.com
Allopolyploidy is an evolutionary and mechanistically intriguing process, in that it entails the
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …

Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton

R Hovav, B Chaudhary, JA Udall, L Flagel… - Genetics, 2008 - academic.oup.com
A putative advantage of allopolyploidy is the possibility of differential selection of duplicated
(homeologous) genes originating from two different progenitor genomes. In this note we …

Polyploid formation in cotton is not accompanied by rapid genomic changes

B Liu, CL Brubaker, G Mergeai, RC Cronn… - Genome, 2001 - cdnsciencepub.com
Recent work has demonstrated that allopolyploid speciation in plants may be associated
with non-Mendelian genomic changes in the early generations following polyploid …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its
impact on selection and domestication remains elusive. Here we analyze genome evolution …

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

R Hovav, JA Udall, B Chaudhary… - Proceedings of the …, 2008 - National Acad Sciences
Polyploidy is an important driver of eukaryotic evolution, evident in many animals, fungi, and
plants. One consequence of polyploidy is subfunctionalization, in which the ancestral …

Genomic expression dominance in allopolyploids

RA Rapp, JA Udall, JF Wendel - BMC biology, 2009 - Springer
Background Allopolyploid speciation requires rapid evolutionary reconciliation of two
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …