Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
INTRODUCTION Chromatin adopts an intricate three-dimensional (3D) organization in the
nucleus that is critical for many genome processes, from gene regulation to genome …
nucleus that is critical for many genome processes, from gene regulation to genome …
On the existence and functionality of topologically associating domains
JA Beagan, JE Phillips-Cremins - Nature genetics, 2020 - nature.com
Genomes across a wide range of eukaryotic organisms fold into higher-order chromatin
domains. Topologically associating domains (TADs) were originally discovered empirically …
domains. Topologically associating domains (TADs) were originally discovered empirically …
Regulation of single-cell genome organization into TADs and chromatin nanodomains
Q Szabo, A Donjon, I Jerković, GL Papadopoulos… - Nature …, 2020 - nature.com
The genome folds into a hierarchy of three-dimensional structures within the nucleus. At the
sub-megabase scale, chromosomes form topologically associating domains (TADs) …
sub-megabase scale, chromosomes form topologically associating domains (TADs) …
[HTML][HTML] Advances in chromatin imaging at kilobase-scale resolution
A Boettiger, S Murphy - Trends in Genetics, 2020 - cell.com
It is now widely appreciated that the spatial organization of the genome is nonrandom, and
its complex 3D folding has important consequences for many genome processes. Recent …
its complex 3D folding has important consequences for many genome processes. Recent …
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Chromosomes in proliferating metazoan cells undergo marked structural metamorphoses
every cell cycle, alternating between highly condensed mitotic structures that facilitate …
every cell cycle, alternating between highly condensed mitotic structures that facilitate …
Topological domains in mammalian genomes identified by analysis of chromatin interactions
The spatial organization of the genome is intimately linked to its biological function, yet our
understanding of higher order genomic structure is coarse, fragmented and incomplete. In …
understanding of higher order genomic structure is coarse, fragmented and incomplete. In …
HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions
XT Wang, W Cui, C Peng - Nucleic acids research, 2017 - academic.oup.com
A current question in the high-order organization of chromatin is whether topologically
associating domains (TADs) are distinct from other hierarchical chromatin domains …
associating domains (TADs) are distinct from other hierarchical chromatin domains …
In situ genome sequencing resolves DNA sequence and structure in intact biological samples
INTRODUCTION Genomes are spatially organized across length scales from single base
pairs to whole chromosomes. This organization is thought to regulate gene expression and …
pairs to whole chromosomes. This organization is thought to regulate gene expression and …
Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis
The non-random three-dimensional organization of genomes is critical for many cellular
processes. Recently, analyses of genome-wide chromatin packing in the model dicot plant …
processes. Recently, analyses of genome-wide chromatin packing in the model dicot plant …
Condensed but liquid-like domain organization of active chromatin regions in living human cells
In eukaryotes, higher-order chromatin organization is spatiotemporally regulated as
domains, for various cellular functions. However, their physical nature in living cells remains …
domains, for various cellular functions. However, their physical nature in living cells remains …