Exploiting PubChem for virtual screening
XQS Xie - Expert opinion on drug discovery, 2010 - Taylor & Francis
Importance of the field: PubChem is a public molecular information repository, a scientific
showcase of the National Institutes of Health Roadmap Initiative. The PubChem database …
showcase of the National Institutes of Health Roadmap Initiative. The PubChem database …
Getting the most out of PubChem for virtual screening
S Kim - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: With the emergence of the 'big data'era, the biomedical research community
has great interest in exploiting publicly available chemical information for drug discovery …
has great interest in exploiting publicly available chemical information for drug discovery …
Toward a benchmarking data set able to evaluate ligand-and structure-based virtual screening using public HTS data
M Lindh, F Svensson, W Schaal, J Zhang… - Journal of chemical …, 2015 - ACS Publications
Virtual screening has the potential to accelerate and reduce costs of probe development and
drug discovery. To develop and benchmark virtual screening methods, validation data sets …
drug discovery. To develop and benchmark virtual screening methods, validation data sets …
Finding potential multitarget ligands using PubChem
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a key chemical information
resource, developed and maintained by the US National Institutes of Health. The present …
resource, developed and maintained by the US National Institutes of Health. The present …
PubChem BioAssays as a data source for predictive models
Predictive models are widely used in computer-aided drug discovery, particularly for
identifying potentially biologically active molecules based on training sets of compounds …
identifying potentially biologically active molecules based on training sets of compounds …
PubChem: integrated platform of small molecules and biological activities
EE Bolton, Y Wang, PA Thiessen, SH Bryant - Annual reports in …, 2008 - Elsevier
PubChem is an open repository for experimental data identifying the biological activities of
small molecules. PubChem contents include more than: 1000 bioassays, 28 million …
small molecules. PubChem contents include more than: 1000 bioassays, 28 million …
LIT-PCBA: an unbiased data set for machine learning and virtual screening
VK Tran-Nguyen, C Jacquemard… - Journal of chemical …, 2020 - ACS Publications
Comparative evaluation of virtual screening methods requires a rigorous benchmarking
procedure on diverse, realistic, and unbiased data sets. Recent investigations from …
procedure on diverse, realistic, and unbiased data sets. Recent investigations from …
Current trends, overlooked issues, and unmet challenges in virtual screening
D Stumpfe, J Bajorath - Journal of chemical information and …, 2020 - ACS Publications
Virtual compound screening focusing on hit identification is among the most popular
computational approaches in pharmaceutical research. Yet, its opportunities and limitations …
computational approaches in pharmaceutical research. Yet, its opportunities and limitations …
PubChem as a public resource for drug discovery
PubChem is a public repository of small molecules and their biological properties. Currently,
it contains more than 25 million unique chemical structures and 90 million bioactivity …
it contains more than 25 million unique chemical structures and 90 million bioactivity …
Pharmacophore-based virtual screening: a review of recent applications
Importance of the field: In research relating to the development of new drugs, hit
identification and validations are critical for successful optimization of candidates. To …
identification and validations are critical for successful optimization of candidates. To …