Exploiting PubChem for virtual screening

XQS Xie - Expert opinion on drug discovery, 2010 - Taylor & Francis
Importance of the field: PubChem is a public molecular information repository, a scientific
showcase of the National Institutes of Health Roadmap Initiative. The PubChem database …

Getting the most out of PubChem for virtual screening

S Kim - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: With the emergence of the 'big data'era, the biomedical research community
has great interest in exploiting publicly available chemical information for drug discovery …

Toward a benchmarking data set able to evaluate ligand-and structure-based virtual screening using public HTS data

M Lindh, F Svensson, W Schaal, J Zhang… - Journal of chemical …, 2015 - ACS Publications
Virtual screening has the potential to accelerate and reduce costs of probe development and
drug discovery. To develop and benchmark virtual screening methods, validation data sets …

Finding potential multitarget ligands using PubChem

S Kim, BA Shoemaker, EE Bolton, SH Bryant - Computational …, 2018 - Springer
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a key chemical information
resource, developed and maintained by the US National Institutes of Health. The present …

PubChem BioAssays as a data source for predictive models

B Chen, DJ Wild - Journal of Molecular Graphics and Modelling, 2010 - Elsevier
Predictive models are widely used in computer-aided drug discovery, particularly for
identifying potentially biologically active molecules based on training sets of compounds …

PubChem: integrated platform of small molecules and biological activities

EE Bolton, Y Wang, PA Thiessen, SH Bryant - Annual reports in …, 2008 - Elsevier
PubChem is an open repository for experimental data identifying the biological activities of
small molecules. PubChem contents include more than: 1000 bioassays, 28 million …

LIT-PCBA: an unbiased data set for machine learning and virtual screening

VK Tran-Nguyen, C Jacquemard… - Journal of chemical …, 2020 - ACS Publications
Comparative evaluation of virtual screening methods requires a rigorous benchmarking
procedure on diverse, realistic, and unbiased data sets. Recent investigations from …

Current trends, overlooked issues, and unmet challenges in virtual screening

D Stumpfe, J Bajorath - Journal of chemical information and …, 2020 - ACS Publications
Virtual compound screening focusing on hit identification is among the most popular
computational approaches in pharmaceutical research. Yet, its opportunities and limitations …

PubChem as a public resource for drug discovery

Q Li, T Cheng, Y Wang, SH Bryant - Drug discovery today, 2010 - Elsevier
PubChem is a public repository of small molecules and their biological properties. Currently,
it contains more than 25 million unique chemical structures and 90 million bioactivity …

Pharmacophore-based virtual screening: a review of recent applications

KH Kim, ND Kim, BL Seong - Expert opinion on drug discovery, 2010 - Taylor & Francis
Importance of the field: In research relating to the development of new drugs, hit
identification and validations are critical for successful optimization of candidates. To …