The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets
Through harmonized procedures and by sharing site-specific brain metrics (for example,
cortical thickness) or aggregated statistical maps, ENIGMA has set the stage for large-scale …
cortical thickness) or aggregated statistical maps, ENIGMA has set the stage for large-scale …
[HTML][HTML] Neuromaps: structural and functional interpretation of brain maps
Imaging technologies are increasingly used to generate high-resolution reference maps of
brain structure and function. Comparing experimentally generated maps to these reference …
brain structure and function. Comparing experimentally generated maps to these reference …
[HTML][HTML] Micapipe: A pipeline for multimodal neuroimaging and connectome analysis
Multimodal magnetic resonance imaging (MRI) has accelerated human neuroscience by
fostering the analysis of brain microstructure, geometry, function, and connectivity across …
fostering the analysis of brain microstructure, geometry, function, and connectivity across …
[HTML][HTML] Predicting regional neurodegeneration from the healthy brain functional connectome
J Zhou, ED Gennatas, JH Kramer, BL Miller… - Neuron, 2012 - cell.com
Neurodegenerative diseases target large-scale neural networks. Four competing
mechanistic hypotheses have been proposed to explain network-based disease patterning …
mechanistic hypotheses have been proposed to explain network-based disease patterning …
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Neuroimaging research requires purpose-built analysis software, which is challenging to
install and may produce different results across computing environments. The community …
install and may produce different results across computing environments. The community …
[HTML][HTML] Whole-brain tissue mapping toolkit using large-scale highly multiplexed immunofluorescence imaging and deep neural networks
Mapping biological processes in brain tissues requires piecing together numerous
histological observations of multiple tissue samples. We present a direct method that …
histological observations of multiple tissue samples. We present a direct method that …
A community-developed open-source computational ecosystem for big neuro data
To the Editor—Recent technological developments, such as high-throughput imaging and
sequencing, enable experimentalists to collect increasingly large, complex, and …
sequencing, enable experimentalists to collect increasingly large, complex, and …
Building better biomarkers: brain models in translational neuroimaging
Despite its great promise, neuroimaging has yet to substantially impact clinical practice and
public health. However, a developing synergy between emerging analysis techniques and …
public health. However, a developing synergy between emerging analysis techniques and …
[HTML][HTML] Inference in the age of big data: Future perspectives on neuroscience
Neuroscience is undergoing faster changes than ever before. Over 100 years our field
qualitatively described and invasively manipulated single or few organisms to gain …
qualitatively described and invasively manipulated single or few organisms to gain …
Moving beyond processing and analysis-related variation in neuroscience
When fields lack consensus standards and ground truths for their analytic methods,
reproducibility can be more of an ideal than a reality. Such has been the case for functional …
reproducibility can be more of an ideal than a reality. Such has been the case for functional …