The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging

C Paquola, J Royer, LB Lewis, C Lepage, T Glatard… - Elife, 2021 - elifesciences.org
Neuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of
the human brain; the first of which is 'BigBrain'. Here, we review recent methodological …

[HTML][HTML] Global gene expression profiling of healthy human brain and its application in studying neurological disorders

SK Negi, C Guda - Scientific reports, 2017 - nature.com
Brain function is governed by precise regulation of gene expression across its anatomically
distinct structures; however, the expression patterns of genes across hundreds of brain …

Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses

N Bhagwat, A Barry, EW Dickie, ST Brown… - …, 2021 - academic.oup.com
Background The choice of preprocessing pipeline introduces variability in neuroimaging
analyses that affects the reproducibility of scientific findings. Features derived from structural …

Large-scale automated synthesis of human functional neuroimaging data

T Yarkoni, RA Poldrack, TE Nichols, DC Van Essen… - Nature …, 2011 - nature.com
The rapid growth of the literature on neuroimaging in humans has led to major advances in
our understanding of human brain function but has also made it increasingly difficult to …

[图书][B] Unlocking the brain: volume 1: coding

G Northoff - 2013 - books.google.com
Neuroscience has made considerable progress in figuring out how the brain works. We
know much about the molecular-genetic and biochemical underpinnings of sensory and …

NeuroQuery, comprehensive meta-analysis of human brain mapping

J Dockès, RA Poldrack, R Primet, H Gözükan… - elife, 2020 - elifesciences.org
Reaching a global view of brain organization requires assembling evidence on widely
different mental processes and mechanisms. The variety of human neuroscience concepts …

Mapping the human brain's cortical-subcortical functional network organization

JL Ji, M Spronk, K Kulkarni, G Repovš, A Anticevic… - Neuroimage, 2019 - Elsevier
Understanding complex systems such as the human brain requires characterization of the
system's architecture across multiple levels of organization–from neurons, to local circuits, to …

[HTML][HTML] TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models

R Ciric, WH Thompson, R Lorenz, M Goncalves… - Nature …, 2022 - nature.com
Reference anatomies of the brain ('templates') and corresponding atlases are the foundation
for reporting standardized neuroimaging results. Currently, there is no registry of templates …

[HTML][HTML] brainlife. io: a decentralized and open-source cloud platform to support neuroscience research

S Hayashi, BA Caron, AS Heinsfeld, S Vinci-Booher… - Nature …, 2024 - nature.com
Neuroscience is advancing standardization and tool development to support rigor and
transparency. Consequently, data pipeline complexity has increased, hindering FAIR …

[HTML][HTML] Site effects how-to and when: An overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses

JMM Bayer, PM Thompson, CRK Ching, M Liu… - Frontiers in …, 2022 - frontiersin.org
Site differences, or systematic differences in feature distributions across multiple data-
acquisition sites, are a known source of heterogeneity that may adversely affect large-scale …