Empirical and deterministic accuracies of across-population genomic prediction
Background Differences in linkage disequilibrium and in allele substitution effects of QTL
(quantitative trait loci) may hinder genomic prediction across populations. Our objective was …
(quantitative trait loci) may hinder genomic prediction across populations. Our objective was …
Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers
D Wittenburg, N Melzer, N Reinsch - BMC genetics, 2011 - Springer
Background Molecular marker information is a common source to draw inferences about the
relationship between genetic and phenotypic variation. Genetic effects are often modelled …
relationship between genetic and phenotypic variation. Genetic effects are often modelled …
An equation to predict the accuracy of genomic values by combining data from multiple traits, populations, or environments
Predicting the accuracy of estimated genomic values using genome-wide marker
information is an important step in designing training populations. Currently, different …
information is an important step in designing training populations. Currently, different …
Haplotype analysis of genomic prediction using structural and functional genomic information for seven human phenotypes
Genomic prediction using multi-allelic haplotype models improved the prediction accuracy
for all seven human phenotypes, the normality transformed high density lipoproteins, low …
for all seven human phenotypes, the normality transformed high density lipoproteins, low …
Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits
Important knowledge about the determinants of complex human phenotypes can be
obtained from the estimation of heritability, the fraction of phenotypic variation in a …
obtained from the estimation of heritability, the fraction of phenotypic variation in a …
Different models and single-nucleotide polymorphisms signal the simulated weak gene-gene interaction for a quantitative trait using haplotype-based and mixed …
IP Kovac, MP Dubé - BMC proceedings, 2009 - Springer
Abstract Knowledge of simulated genetic effects facilitates interpretation of methodological
studies. Genetic interactions for common disorders are likely numerous and weak. Using the …
studies. Genetic interactions for common disorders are likely numerous and weak. Using the …
The impact of non-additive effects on the genetic correlation between populations
Average effects of alleles can show considerable differences between populations. The
magnitude of these differences can be measured by the additive genetic correlation …
magnitude of these differences can be measured by the additive genetic correlation …
[HTML][HTML] Estimation of indirect genetic effects and heritability under assortative mating
AS Young - bioRxiv, 2023 - ncbi.nlm.nih.gov
Both direct genetic effects (effects of alleles in an individual on that individual) and indirect
genetic effects—effects of alleles in an individual (eg parents) on another individual (eg …
genetic effects—effects of alleles in an individual (eg parents) on another individual (eg …
Quantitative genetics model as the unifying model for defining genomic relationship and inbreeding coefficient
C Wang, Y Da - PLoS One, 2014 - journals.plos.org
The traditional quantitative genetics model was used as the unifying approach to derive six
existing and new definitions of genomic additive and dominance relationships. The …
existing and new definitions of genomic additive and dominance relationships. The …
MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment
S Zhu, G Fang - Bioinformatics, 2018 - academic.oup.com
Motivation For many traits, causal loci uncovered by genetic mapping studies explain only a
minority of the heritable contribution to trait variation. Multiple explanations for this 'missing …
minority of the heritable contribution to trait variation. Multiple explanations for this 'missing …