Empirical and deterministic accuracies of across-population genomic prediction

YCJ Wientjes, RF Veerkamp, P Bijma… - Genetics Selection …, 2015 - Springer
Background Differences in linkage disequilibrium and in allele substitution effects of QTL
(quantitative trait loci) may hinder genomic prediction across populations. Our objective was …

Including non-additive genetic effects in Bayesian methods for the prediction of genetic values based on genome-wide markers

D Wittenburg, N Melzer, N Reinsch - BMC genetics, 2011 - Springer
Background Molecular marker information is a common source to draw inferences about the
relationship between genetic and phenotypic variation. Genetic effects are often modelled …

An equation to predict the accuracy of genomic values by combining data from multiple traits, populations, or environments

YCJ Wientjes, P Bijma, RF Veerkamp, MPL Calus - Genetics, 2016 - academic.oup.com
Predicting the accuracy of estimated genomic values using genome-wide marker
information is an important step in designing training populations. Currently, different …

Haplotype analysis of genomic prediction using structural and functional genomic information for seven human phenotypes

Z Liang, C Tan, D Prakapenka, L Ma, Y Da - Frontiers in genetics, 2020 - frontiersin.org
Genomic prediction using multi-allelic haplotype models improved the prediction accuracy
for all seven human phenotypes, the normality transformed high density lipoproteins, low …

Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits

N Zaitlen, P Kraft, N Patterson, B Pasaniuc… - PLoS …, 2013 - journals.plos.org
Important knowledge about the determinants of complex human phenotypes can be
obtained from the estimation of heritability, the fraction of phenotypic variation in a …

Different models and single-nucleotide polymorphisms signal the simulated weak gene-gene interaction for a quantitative trait using haplotype-based and mixed …

IP Kovac, MP Dubé - BMC proceedings, 2009 - Springer
Abstract Knowledge of simulated genetic effects facilitates interpretation of methodological
studies. Genetic interactions for common disorders are likely numerous and weak. Using the …

The impact of non-additive effects on the genetic correlation between populations

P Duenk, P Bijma, MPL Calus… - G3: Genes …, 2020 - academic.oup.com
Average effects of alleles can show considerable differences between populations. The
magnitude of these differences can be measured by the additive genetic correlation …

[HTML][HTML] Estimation of indirect genetic effects and heritability under assortative mating

AS Young - bioRxiv, 2023 - ncbi.nlm.nih.gov
Both direct genetic effects (effects of alleles in an individual on that individual) and indirect
genetic effects—effects of alleles in an individual (eg parents) on another individual (eg …

Quantitative genetics model as the unifying model for defining genomic relationship and inbreeding coefficient

C Wang, Y Da - PLoS One, 2014 - journals.plos.org
The traditional quantitative genetics model was used as the unifying approach to derive six
existing and new definitions of genomic additive and dominance relationships. The …

MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment

S Zhu, G Fang - Bioinformatics, 2018 - academic.oup.com
Motivation For many traits, causal loci uncovered by genetic mapping studies explain only a
minority of the heritable contribution to trait variation. Multiple explanations for this 'missing …