Precision breeding of grapevine (Vitis vinifera L.) for improved traits

DJ Gray, ZT Li, SA Dhekney - Plant science, 2014 - Elsevier
This review provides an overview of recent technological advancements that enable
precision breeding to genetically improve elite cultivars of grapevine (Vitis vinifera L.) …

PLANEX: the plant co-expression database

WC Yim, Y Yu, K Song, CS Jang, BM Lee - BMC plant biology, 2013 - Springer
Abstract Background The PLAnt co-EXpression database (PLANEX) is a new internet-based
database for plant gene analysis. PLANEX (http://planex. plantbioinformatics. org) contains …

Co-expression analysis of metabolic pathways in plants

A Loraine - Plant Systems Biology, 2009 - Springer
Co-expression analysis allows experimenters to re-use archived expression microarray data
to uncover previously unknown functional relationships between genes. An observation that …

A molecular phenology scale of grape berry development

GB Tornielli, M Sandri, M Fasoli, A Amato… - Horticulture …, 2023 - academic.oup.com
Fruit growth and development consist of a continuous succession of physical, biochemical,
and physiological changes driven by a genetic program that dynamically responds to …

CressExpress: a tool for large-scale mining of expression data from Arabidopsis

V Srinivasasainagendra, GP Page, T Mehta… - Plant …, 2008 - academic.oup.com
CressExpress is a user-friendly, online, coexpression analysis tool for Arabidopsis
(Arabidopsis thaliana) microarray expression data that computes patterns of correlated …

Grapevine biotechnology: Molecular approaches underlying abiotic and biotic stress responses

G Armijo, C Espinoza, R Loyola… - Grape and wine …, 2016 - books.google.com
Grapevine is one of the most abundant crops worldwide, with varieties destined for fresh and
dry consumption, as well as wine production. Unfortunately, grapevine plants are affected by …

ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants

T Obayashi, K Nishida, K Kasahara… - Plant and cell …, 2011 - academic.oup.com
Abstract ATTED-II (http://atted. jp) is a gene coexpression database for a wide variety of
experimental designs, such as prioritizations of genes for functional identification and …

Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response

Z Zhang, C Ren, L Zou, Y Wang, S Li, Z Liang - Genome, 2018 - cdnsciencepub.com
The plant GATA family is one of the most important transcription factors involved in light-
responsive development, nitrogen metabolism, phytohormone signaling, and source/sink …

Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

P Delfino, S Zenoni, Z Imanifard, GB Tornielli, D Bellin - BMC genomics, 2019 - Springer
Background High temperature during grape berry ripening impairs the quality of fruits and
wines. Veraison time, which marks ripening onset, is a key factor for determining climatic …

[HTML][HTML] Recent advances in gene function prediction using context-specific coexpression networks in plants

C Gupta, A Pereira - F1000Research, 2019 - ncbi.nlm.nih.gov
Predicting gene functions from genome sequence alone has been difficult, and the functions
of a large fraction of plant genes remain unknown. However, leveraging the vast amount of …