A practical guide to using structural variants for genome-wide association studies

MA Lemay, S Malle - Genome-Wide Association Studies, 2022 - Springer
Structural variants (SVs) are known to have large functional impacts on phenotypes of
agricultural interest, but they have yet to be routinely used for GWAS. Apart from the difficulty …

[HTML][HTML] Genome-wide association studies in maize: praise and stargaze

Y Xiao, H Liu, L Wu, M Warburton, J Yan - Molecular plant, 2017 - cell.com
Genome-wide association study (GWAS) has become a widely accepted strategy for
decoding genotype-phenotype associations in many species thanks to advances in next …

[HTML][HTML] Leveraging the potential of big genomic and phenotypic data for genome-wide association mapping in wheat

M Lell, Y Zhao, JC Reif - The Crop Journal, 2024 - Elsevier
Genome-wide association mapping studies (GWAS) based on Big Data are a potential
approach to improve marker-assisted selection in plant breeding. The number of available …

[HTML][HTML] Recommendations for choosing the genotyping method and best practices for quality control in crop genome-wide association studies

S Pavan, C Delvento, L Ricciardi, C Lotti, E Ciani… - Frontiers in …, 2020 - frontiersin.org
High-throughput genotyping boosts genome-wide association studies (GWAS) in crop
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …

Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection

X Yang, J Yan, T Shah, ML Warburton, Q Li, L Li… - Theoretical and Applied …, 2010 - Springer
Association mapping based on the linkage disequilibrium provides a promising tool to
identify genes responsible for quantitative variations underlying complex traits. Presented …

A combination of linkage mapping and GWAS brings new elements on the genetic basis of yield-related traits in maize across multiple environments

X Zhang, Z Guan, Z Li, P Liu, L Ma, Y Zhang… - Theoretical and Applied …, 2020 - Springer
Key message Using GWAS and QTL mapping identified 100 QTL and 138 SNPs, which
control yield-related traits in maize. The candidate gene GRMZM2G098557 was further …

[HTML][HTML] Gene-based genome-wide association study identified genes for agronomic traits in maize

Y Zhao, J Gao, X Guo, B Su, H Wang, R Yang, L Jiang - Biology, 2022 - mdpi.com
Simple Summary Genome-wide association studies (GWAS) have successfully detected
many SNPs related to complex quantitative traits. However, SNPs significantly associated …

Comparison of weighted and unweighted stage‐wise analysis for genome‐wide association studies and genomic selection

TM Damesa, J Hartung, M Gowda, Y Beyene… - Crop …, 2019 - Wiley Online Library
Both genome‐wide association studies (GWAS) and genomic selection (GS) are done using
phenotypic and genomic data. The phenotypic data are usually based on multi‐environment …

Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding

JA Mammadov, W Chen, R Ren, R Pai… - Theoretical and applied …, 2010 - Springer
The duplicated and the highly repetitive nature of the maize genome has historically
impeded the development of true single nucleotide polymorphism (SNP) markers in this …