A practical guide to using structural variants for genome-wide association studies
MA Lemay, S Malle - Genome-Wide Association Studies, 2022 - Springer
Structural variants (SVs) are known to have large functional impacts on phenotypes of
agricultural interest, but they have yet to be routinely used for GWAS. Apart from the difficulty …
agricultural interest, but they have yet to be routinely used for GWAS. Apart from the difficulty …
[HTML][HTML] Genome-wide association studies in maize: praise and stargaze
Genome-wide association study (GWAS) has become a widely accepted strategy for
decoding genotype-phenotype associations in many species thanks to advances in next …
decoding genotype-phenotype associations in many species thanks to advances in next …
[HTML][HTML] Leveraging the potential of big genomic and phenotypic data for genome-wide association mapping in wheat
Genome-wide association mapping studies (GWAS) based on Big Data are a potential
approach to improve marker-assisted selection in plant breeding. The number of available …
approach to improve marker-assisted selection in plant breeding. The number of available …
[HTML][HTML] Recommendations for choosing the genotyping method and best practices for quality control in crop genome-wide association studies
S Pavan, C Delvento, L Ricciardi, C Lotti, E Ciani… - Frontiers in …, 2020 - frontiersin.org
High-throughput genotyping boosts genome-wide association studies (GWAS) in crop
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …
Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection
Association mapping based on the linkage disequilibrium provides a promising tool to
identify genes responsible for quantitative variations underlying complex traits. Presented …
identify genes responsible for quantitative variations underlying complex traits. Presented …
A combination of linkage mapping and GWAS brings new elements on the genetic basis of yield-related traits in maize across multiple environments
X Zhang, Z Guan, Z Li, P Liu, L Ma, Y Zhang… - Theoretical and Applied …, 2020 - Springer
Key message Using GWAS and QTL mapping identified 100 QTL and 138 SNPs, which
control yield-related traits in maize. The candidate gene GRMZM2G098557 was further …
control yield-related traits in maize. The candidate gene GRMZM2G098557 was further …
[HTML][HTML] Gene-based genome-wide association study identified genes for agronomic traits in maize
Y Zhao, J Gao, X Guo, B Su, H Wang, R Yang, L Jiang - Biology, 2022 - mdpi.com
Simple Summary Genome-wide association studies (GWAS) have successfully detected
many SNPs related to complex quantitative traits. However, SNPs significantly associated …
many SNPs related to complex quantitative traits. However, SNPs significantly associated …
Comparison of weighted and unweighted stage‐wise analysis for genome‐wide association studies and genomic selection
Both genome‐wide association studies (GWAS) and genomic selection (GS) are done using
phenotypic and genomic data. The phenotypic data are usually based on multi‐environment …
phenotypic and genomic data. The phenotypic data are usually based on multi‐environment …
Status and prospects of genome‐wide association studies in plants
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …
tool for the investigation of complex traits. In large part, this was fueled by advances in …
Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding
JA Mammadov, W Chen, R Ren, R Pai… - Theoretical and applied …, 2010 - Springer
The duplicated and the highly repetitive nature of the maize genome has historically
impeded the development of true single nucleotide polymorphism (SNP) markers in this …
impeded the development of true single nucleotide polymorphism (SNP) markers in this …