A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes

M Škrabišová, N Dietz, S Zeng, YO Chan… - Journal of Advanced …, 2022 - Elsevier
Abstract Introduction Genome-Wide Association Studies (GWAS) identify tagging variants in
the genome that are statistically associated with the phenotype because of their linkage …

Association mapping in an elite maize breeding population

W Liu, M Gowda, J Steinhoff, HP Maurer… - Theoretical and Applied …, 2011 - Springer
Association mapping (AM) is a powerful approach to dissect the genetic architecture of
quantitative traits. The main goal of our study was to empirically compare several statistical …

Decoding the genetic basis of ear‐related traits in maize (Zea mays L.) using linkage mapping, association mapping and genomic prediction

L Chang, K He, J Liu - Plant Breeding - Wiley Online Library
As important yield components, the genetic analysis of ear‐related traits could provide a
theoretical basis for maize breeding. Here, we reported the comprehensive genetic …

Capturing pair-wise epistatic effects associated with three agronomic traits in barley

Y Xu, Y Wu, J Wu - Genetica, 2018 - Springer
Genetic association mapping has been widely applied to determine genetic markers
favorably associated with a trait of interest and provide information for marker-assisted …

[PDF][PDF] Detection of quantitative trait loci for ear row number in F

C Yang, J Liu, TZ Rong - Genetics and Molecular Research, 2015 - geneticsmr.com
Ear row number (ERN) is not only a key trait involved in maize (Zea mays L.) evolution but is
also an important component that is directly related to grain yield. In this study, quantitative …

Association mapping across a multitude of traits collected in diverse environments identifies pleiotropic loci in maize

RV Mural, G Sun, M Grzybowski, MC Tross, H Jin… - bioRxiv, 2022 - biorxiv.org
Classical genetic studies have identified many cases of pleiotropy where mutations in
individual genes alter many different phenotypes. Quantitative genetic studies of natural …

Genome-wide association scans (GWAS)

R Waugh, B Thomas, A Flavell, L Ramsay… - … approaches to Barley …, 2014 - Springer
Genome-wide association scans (GWAS) provide a mechanism to assess variation that
segregates in a gene pool, rather than in a biparental population. Fashioned originally in …

Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley

AJ Lorenz, MT Hamblin, JL Jannink - PloS one, 2010 - journals.plos.org
Genome-wide association studies (GWAS) may benefit from utilizing haplotype information
for making marker-phenotype associations. Several rationales for grouping single …

Genome-wide association studies and whole-genome prediction reveal the genetic architecture of KRN in maize

Y An, L Chen, YX Li, C Li, Y Shi, D Zhang, Y Li… - BMC Plant …, 2020 - Springer
Background Kernel row number (KRN) is an important trait for the domestication and
improvement of maize. Exploring the genetic basis of KRN has great research significance …

A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources

B Darrier, J Russell, SG Milner, PE Hedley… - Frontiers in plant …, 2019 - frontiersin.org
We compared the performance of two commonly used genotyping platforms, genotyping-by-
sequencing (GBS) and single nucleotide polymorphism-arrays (SNP), to investigate the …