Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics

T Müller, E Boileau, S Talyan, D Kehr, K Varadi… - Journal of molecular and …, 2021 - Elsevier
Clinically translatable large animal models have become indispensable for cardiovascular
research, clinically relevant proof of concept studies and for novel therapeutic interventions …

[HTML][HTML] Single-nucleus transcriptomics reveal cardiac cell type-specific diversification in metabolic disease transgenic pigs

J Miao, K Zhang, Y Yang, S Xu, J Du, T Wu, C Tao… - Iscience, 2024 - cell.com
Cardiac damage is widely present in patients with metabolic diseases, but the exact
pathophysiological mechanisms involved remain unclear. The porcine heart is an ideal …

[HTML][HTML] Perspectives on bulk-tissue RNA sequencing and single-cell RNA sequencing for cardiac transcriptomics

JC Hegenbarth, G Lezzoche, LJ De Windt… - Frontiers in Molecular …, 2022 - frontiersin.org
The heart has been the center of numerous transcriptomic studies in the past decade. Even
though our knowledge of the key organ in our cardiovascular system has significantly …

Genome-wide dynamics of nascent noncoding RNA transcription in porcine heart after myocardial infarction

MU Kaikkonen, P Halonen, OHF Liu… - Circulation …, 2017 - Am Heart Assoc
Background—Microarrays and RNA sequencing are widely used to profile transcriptome
remodeling during myocardial ischemia. However, the steady-state RNA analysis lacks in …

[HTML][HTML] Deciphering cell-type-specific gene expression signatures of cardiac diseases through reconstruction of bulk transcriptomes

X Wu, X Zhao, Y Xiong, M Zheng, C Zhong… - Frontiers in cell and …, 2022 - frontiersin.org
Cardiac diseases compose a fatal disease category worldwide. Over the past decade, high-
throughput transcriptome sequencing of bulk heart tissues has widened our understanding …

[HTML][HTML] A high-quality annotated transcriptome of swine peripheral blood

H Liu, TPL Smith, DJ Nonneman, JCM Dekkers… - BMC genomics, 2017 - Springer
Background High throughput gene expression profiling assays of peripheral blood are
widely used in biomedicine, as well as in animal genetics and physiology research …

[HTML][HTML] Single-cell RNA sequencing of murine hearts for studying the development of the cardiac conduction system

H Ren, X Zhou, J Yang, K Kou, T Chen, Z Pu, K Ye… - Scientific Data, 2023 - nature.com
The development of the cardiac conduction system (CCS) is essential for correct heart
function. However, critical details on the cell types populating the CCS in the mammalian …

[HTML][HTML] Transcriptional profile of the rat cardiovascular system at single cell resolution

A Arduini, SJ Fleming, L Xiao, AW Hall, AD Akkad… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Background: Despite the critical role of the cardiovascular system, our understanding of its
cellular and transcriptional diversity remains limited. We therefore sought to characterize the …

Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts

JH Lee, C Gao, G Peng, C Greer, S Ren… - Circulation …, 2011 - Am Heart Assoc
Rationale: Accurate and comprehensive de novo transcriptome profiling in heart is a central
issue to better understand cardiac physiology and diseases. Although significant progress …

[HTML][HTML] Cardiac transcriptome profiling of diabetic Akita mice using microarray and next generation sequencing

V Kesherwani, HR Shahshahan, PK Mishra - PloS one, 2017 - journals.plos.org
Although diabetes mellitus (DM) causes cardiomyopathy and exacerbates heart failure, the
underlying molecular mechanisms for diabetic cardiomyopathy/heart failure are poorly …