Ligand-Optimized Homology Models of D1 and D2 Dopamine Receptors: Application for Virtual Screening

M Kołaczkowski, A Bucki, M Feder… - Journal of chemical …, 2013 - ACS Publications
Recent breakthroughs in crystallographic studies of G protein-coupled receptors (GPCRs),
together with continuous progress in molecular modeling methods, have opened new …

Homology model versus X-ray structure in receptor-based drug design: A retrospective analysis with the dopamine D3 receptor

N Levoin, T Calmels, S Krief, D Danvy… - ACS Medicinal …, 2011 - ACS Publications
Structure-based design methods commonly used in medicinal chemistry rely on a three-
dimensional representation of the receptor. However, few crystal structures are solved in …

[HTML][HTML] Homology Modeling of Dopamine D2 and D3 Receptors: Molecular Dynamics Refinement and Docking Evaluation

CBM Platania, S Salomone, GM Leggio, F Drago… - 2012 - journals.plos.org
Dopamine (DA) receptors, a class of G-protein coupled receptors (GPCRs), have been
targeted for drug development for the treatment of neurological, psychiatric and ocular …

[HTML][HTML] Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity

M Jaiteh, I Rodríguez-Espigares, J Selent… - PLoS computational …, 2020 - journals.plos.org
Rational drug design for G protein-coupled receptors (GPCRs) is limited by the small
number of available atomic resolution structures. We assessed the use of homology …

Modeling and protein engineering studies of active and inactive states of human dopamine D2 receptor (D2R) and investigation of drug/receptor interactions

RE Salmas, M Yurtsever, M Stein, S Durdagi - Molecular diversity, 2015 - Springer
Homology model structures of the dopamine D2 receptor (D2R) were generated starting
from the active and inactive states of\upbeta β 2-adrenergic crystal structure templates. To …

Ligand discovery from a dopamine D3 receptor homology model and crystal structure

J Carlsson, RG Coleman, V Setola, JJ Irwin… - Nature chemical …, 2011 - nature.com
G protein–coupled receptors (GPCRs) are intensely studied as drug targets and for their role
in signaling. With the determination of the first crystal structures, interest in structure-based …

Structure-Guided Screening for Functionally Selective D2 Dopamine Receptor Ligands from a Virtual Chemical Library

B Mannel, M Jaiteh, A Zeifman, A Randakova… - ACS Chemical …, 2017 - ACS Publications
Functionally selective ligands stabilize conformations of G protein-coupled receptors
(GPCRs) that induce a preference for signaling via a subset of the intracellular pathways …

Progress in the structural prediction of G protein‐coupled receptors: D3 receptor in complex with eticlopride

C Obiol‐Pardo, L López, M Pastor… - … Structure, Function, and …, 2011 - Wiley Online Library
Predicting the three‐dimensional structure of ligand–receptor complexes involving G protein‐
coupled receptors (GPCRs) is still a challenging task in rational drug design. To evaluate the …

[HTML][HTML] The dopamine D2 receptor dimer and its interaction with homobivalent antagonists: homology modeling, docking and molecular dynamics

AA Kaczor, M Jörg, B Capuano - Journal of Molecular Modeling, 2016 - Springer
In order to apply structure-based drug design techniques to G protein-coupled receptor
complexes, it is essential to model their 3D structure and to identify regions that are suitable …

Investigation of D2 Receptor–Agonist Interactions Using a Combination of Pharmacophore and Receptor Homology Modeling

M Malo, L Brive, K Luthman, P Svensson - ChemMedChem, 2012 - Wiley Online Library
A combined modeling approach was used to identify structural factors that underlie the
structure–activity relationships (SARs) of full dopamine D2 receptor agonists and structurally …