Conservation of regulatory elements between two species of Drosophila

E Emberly, N Rajewsky, ED Siggia - BMC bioinformatics, 2003 - Springer
… There are classes of sites that do behave this way (eg the 4 copies of torso response
element), but their numbers are small. Another meaningful decomposition of the data is between …

Evolutionary Plasticity of Polycomb/Trithorax Response Elements in Drosophila Species

A Hauenschild, L Ringrose, C Altmutter, R Paro… - PLoS …, 2008 - journals.plos.org
… , to examine how regulatory DNA evolves in four Drosophila species. We focus on
Polycomb/Trithorax response elements (PREs), which regulate several hundred developmental …

Polycomb group response elements in Drosophila and vertebrates

JA Kassis, JL Brown - Advances in genetics, 2013 - Elsevier
… In Drosophila, we concentrate on target genes that are bound by both PRC1 and PRC2
and describe what is known about Polycomb group response element (PREs), DNA fragments …

Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster

JL Villanueva-Cañas, V Horvath, L Aguilera… - Nucleic acids …, 2019 - academic.oup.com
… In both species, we used a threshold of 1.5 in lor score, which equals 2.83 more TFBSs in …
could significantly contribute to the spreading of hypoxia response elements (HRE) in the D. …

Damage-responsive elements in Drosophila regeneration

E Vizcaya-Molina, CC Klein, F Serras… - Genome …, 2018 - genome.cshlp.org
… Taking advantage of those data, we found that ∼40% of iDRREs are active in other Drosophila
species, whereas enhancer activity has been proven for only 20% of novel eDRREs (Fig. …

Sequence signature analysis of chromosome identity in three Drosophila species

P Stenberg, F Pettersson, AO Saura, A Berglund… - BMC …, 2005 - Springer
Drosophila genomes we found sequence signatures that distinguish Muller's F-elements (…
The three Drosophila species examined in this study (D. yakuba, D. pseudoobscura and D. …

Comparative genomics analysis of metallothioneins in twelve Drosophila species

M Guirola, Y Naranjo, M Capdevila, S Atrian - Journal of inorganic …, 2011 - Elsevier
… Localization of the TATA boxes and MREs (metal response elements) in the neighboring
5′ and 3′ regions of the MT genes of the twelve Drosophila species analyzed in this work. …

Genome wide analysis of common and specific stress responses in adult Drosophila melanogaster

F Girardot, V Monnier, H Tricoire - BMC genomics, 2004 - Springer
… It is generated by several reactive oxygen species (ROS), … the appearance of the most toxic
species. Therefore, since free … Irp that bind to the iron responsive elements (IRE) located in …

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

GE Rech, M Bogaerts-Marquez, MG Barrón… - PLoS …, 2019 - journals.plos.org
elements in 91 samples from 60 worldwide natural populations of the model species
Drosophila melanogaster. The genomic regions surrounding 84 transposable elements indicate …

Combinatorial gene regulatory functions underlie ultraconserved elements in Drosophila

M Warnefors, B Hartmann, S Thomsen… - … biology and evolution, 2016 - academic.oup.com
… Thus, our novel approach applied to distantly related Drosophila species points toward a
general and robust association between ultraconservation and the genetic control of animal …