A simple method for DNA restriction site mapping

HO Smith, ML Birnstiel - Nucleic acids research, 1976 - academic.oup.com
… of restriction sites in a cloned 6 kb repeat unit of the sea urchin Psammechinus miliaris
histcme DNA. … The distribution and sites of these distinct kinds of DNA sequences in the 6 kb …

Sequence capture versus restriction site associated DNA sequencing for shallow systematics

MG Harvey, BT Smith, TC Glenn, BC Faircloth… - Systematic …, 2016 - academic.oup.com
Sequence capture and restriction site associated DNA sequencing (RAD-Seq) are two …
Restriction site associated DNA sequencing (RAD-Seq) is the most widespread method for …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Restriction site-associated DNA sequencing (RADseq) has dramatically decreased the cost
… methods produce DNA libraries for high-throughput sequencing using restriction enzymes …

Identification of sex‐specific molecular markers using restriction site‐associated DNA sequencing

T Gamble, D Zarkower - Molecular Ecology Resources, 2014 - Wiley Online Library
… We describe the use of restriction site-associated DNA (RAD) sequencing, or RAD-seq, to
identify sex-specific molecular markers and subsequently determine whether a species has …

Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference

A Mastretta‐Yanes, N Arrigo, N Alvarez… - Molecular ecology …, 2015 - Wiley Online Library
Restriction site‐associated DNA sequencing ( RAD seq) provides researchers with the
ability to record genetic polymorphism across thousands of loci for nonmodel organisms, …

Statistical analyses of counts and distributions of restriction sites in DNA sequences

S Karlin, C Burge, AM Campbell - Nucleic acids research, 1992 - academic.oup.com
… (exceeding 1.43 Mb), as well as for sequences from several bacteriophages, bacteria, …
Restriction site counts and spacings in various species may suggest choices of restriction

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato

K Shirasawa, H Hirakawa, S Isobe - DNA research, 2016 - academic.oup.com
… genotyping with next-generation sequencing technology. Consequently, … of restriction sites
from the genome sequence is recognized as an effective approach for choosing the restriction

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing

N Wang, L Fang, H Xin, L Wang, S Li - BMC plant biology, 2012 - Springer
sites for this restriction enzyme is shown in Figure 1. Based on these results, we selected MseI
as the restriction enzyme to construct the DNA sequencing … -kb DNA sequence was equal …

The population structure and recent colonization history of O regon threespine stickleback determined using restrictionsite associated DNAsequencing

J Catchen, S Bassham, T Wilson, M Currey… - Molecular …, 2013 - Wiley Online Library
… We performed restrictionsite associated DNAsequencing ( RAD ‐seq) based population
genomic analyses on stickleback from across O regon, which was not glaciated during the …

Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing

AD Leache, AS Chavez, LN Jones… - Genome biology and …, 2015 - academic.oup.com
Sequence capture and restriction site associated DNA sequencing (RADseq) are popular …
These methods are typically used to collect data at different evolutionary timescales; sequence