Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis
… Here, we assessed the potential of transposable elements for generating such … Rhizophagus
irregularis spore development suggests ongoing TE activity. We find Mutator-like elements …
irregularis spore development suggests ongoing TE activity. We find Mutator-like elements …
Strain-specific evolution and host-specific regulation of transposable elements in the model plant symbiont Rhizophagus irregularis
JIN Oliveira, N Corradi - G3: Genes, Genomes, Genetics, 2024 - academic.oup.com
… size is significantly correlated with the abundance of transposable elements (TEs; Mathu …
Recent studies based on chromosome-level assemblies of Rhizophagus irregularis also …
Recent studies based on chromosome-level assemblies of Rhizophagus irregularis also …
[HTML][HTML] Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis
M Li, J Zhao, N Tang, H Sun, J Huang - Frontiers in Plant Science, 2018 - frontiersin.org
… by the transposase gene family identified in our analyses, which belongs to FAR1 or
MULE domain containing transposable elements (TEs). These selfish genetic elements are …
MULE domain containing transposable elements (TEs). These selfish genetic elements are …
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
… Transposable element sequences also show a very high variability, as we found that half
of the predicted TE families are absent in some isolates, but abundant in others (see Fig. 3; …
of the predicted TE families are absent in some isolates, but abundant in others (see Fig. 3; …
Chromosome Level Genome Assemblies of Rhizophagus irregularis Strains Reveal Genome Evolution and Nuclear Structure in Arbuscular Mycorrhizal Fungi
G Yildirir - 2022 - ruor.uottawa.ca
… transposable element methylations in compartment A is not significant. B) Transposable
elements … methylated significantly heavier than transposable elements found in B compartment …
elements … methylated significantly heavier than transposable elements found in B compartment …
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis
BF Manley, JS Lotharukpong… - G3: Genes …, 2023 - academic.oup.com
… the model AM fungus Rhizophagus irregularis DAOM197198, … isolates of the model species,
Rhizophagus irregularis, and the … of epigenetic and transposable element landscapes of R. …
Rhizophagus irregularis, and the … of epigenetic and transposable element landscapes of R. …
[HTML][HTML] Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis: A comparison of whole genome …
… Recently, studies of the AMF Rhizophagus irregularis recorded within-isolate genetic …
repeats (mobile elements and transposon-like regions) and repeated elements (multicopy genes …
repeats (mobile elements and transposon-like regions) and repeated elements (multicopy genes …
Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
… Examples of variability in the size, gene content and density between the homologous
chromosomes of Rhizophagus irregularis strains analyzed in this study. Red density plot shows …
chromosomes of Rhizophagus irregularis strains analyzed in this study. Red density plot shows …
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
E Morin, S Miyauchi, H San Clemente… - New …, 2019 - Wiley Online Library
… Presence and sequence similarity of symbiosis-upregulated genes from Rhizophagus
irregularis (a) and Gigaspora rosea (b) interacting with Brachypodium distachyon in the genome …
irregularis (a) and Gigaspora rosea (b) interacting with Brachypodium distachyon in the genome …
[HTML][HTML] Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis
… Taking an advantage of the highly contiguous assembly with little ambiguous regions, we
focus on the investigation of the repetitive structures including transposable elements (TE), …
focus on the investigation of the repetitive structures including transposable elements (TE), …
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