Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis

E Kraft, SL Stone, L Ma, N Su, Y Gao, OS Lau… - Plant …, 2005 - academic.oup.com
… Six UBCs were inactive with all RINGs tested. Closely related UBC8, 10, 11, and 28 were
active with the largest number of RING E3s and with all RING types. Expression analysis was …

Functional Analysis of the RING-Type Ubiquitin Ligase Family of Arabidopsis

SL Stone, H Hauksdóttir, A Troy, J Herschleb… - Plant …, 2005 - academic.oup.com
… of the Arabidopsis genome to identify potential RING-containing … In addition to the canonical
RING domains, the search also … study because analysis of the genomic sequence indicated …

Genome-wide analysis of the RING finger gene family in apple

Y Li, B Wu, Y Yu, G Yang, C Wu, C Zheng - … Genetics and Genomics, 2011 - Springer
… common RING type in apple was RING-HC type, with 208 typical RING-HC … our analysis
we identified one canonical RING-D domain in apple genome, indicating diversification of RING

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

D Pérez‐Pantoja, R Donoso, L Agulló… - Environmental …, 2012 - Wiley Online Library
… in 80 Burkholderiales genomes is analysed. This genomic analysis underscores the
impressive catabolic potential of this bacterial lineage, comprising nearly all of the central ring-…

Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome

P Kosarev, KFX Mayer, CS Hardtke - Genome biology, 2002 - Springer
… In summary, 387 domains have a significant potential to form a RING-type cross-brace … of
RING domains in Arabidopsis will serve as a vital starting point for further genome analysis in …

Integrative genome and transcriptome analyses reveal two distinct types of ring chromosome in soft tissue sarcomas

KH Nord, G Macchia, J Tayebwa… - Human Molecular …, 2014 - academic.oup.com
… (FISH), global genomic copy number and gene expression data on ring-containing soft … two
fundamentally different types of ring chromosome: MDM2-positive and MDM2-negative rings. …

Genome-wide analysis of RING-type E3 ligase family identifies potential candidates regulating high amylose starch biosynthesis in wheat (Triticum aestivum L.)

A Parveen, MS Rahim, A Sharma, A Mishra, P Kumar… - Scientific reports, 2021 - nature.com
… In this study, the genome-wide analysis identified 1272 RING domains in 1255 proteins in …
The identified RING domains classified into four groups—RING-H2, RING-HC, RING-v, RING-…

Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum

L Yang, M Miao, H Lyu, X Cao, J Li, Y Li, Z Li… - International Journal of …, 2019 - mdpi.com
… Although numerous RING gene family members have been … , systematic investigation of the
RING-type protein family has been … analysis of the RING gene family in the tomato genome to …

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson - BMC genomics, 2011 - Springer
… comparisons that are increasingly necessary as the number of publicly available genome
sequences increase. BRIG has been designed with the task of draft genome analysis in mind. …

Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants

T Takano, N Yamamoto, T Suzuki, H Dohra, JH Choi… - Scientific reports, 2019 - nature.com
… fairy rings, we analyzed the draft genome sequence in L. sordida. The genome sequencing
… 15 were used to construct a refined genome assembly. Our data analyses revealed general …