RNA remodeling and gene regulation by cold shock proteins

S Phadtare, K Severinov - RNA biology, 2010 - Taylor & Francis
… folding by stabilizing specific RNA structures. Here, we focus only on RNA modulating
cold shock proteins of E. coli. The main RNA modulating cold shock proteins of E. coli can be …

Remodeling of the Caenorhabditis elegans non-coding RNA transcriptome by heat shock

WP Schreiner, DC Pagliuso, JM Garrigues… - Nucleic acids …, 2019 - academic.oup.com
… transcription factor heat shock factor 1 (HSF-1), which binds heat shock elements (HSEs) in
shock (HS). The upregulation of protein-coding genes (PCGs), such as heat shock proteins

RNA helicases and remodeling proteins

AM Pyle - Current Opinion in Chemical Biology, 2011 - Elsevier
… It is becoming increasingly clear that RNA molecules play a major role in all aspects of … of
RNA are controlled by RNA remodeling proteins, which are ubiquitous motor proteins in the cell…

[PDF][PDF] RNA remodeling by chaperones and helicases

K Musier-Forsyth - RNA biology, 2010 - Taylor & Francis
… Several reviews discuss non-retroviral RNA remodeling proteins, including E. coli cold shock
proteins (reviewed by Phadtare and Severinov,pp. 788–95), which can be broadly divided …

[HTML][HTML] Cold shock proteins: from cellular mechanisms to pathophysiology and disease

JA Lindquist, PR Mertens - Cell Communication and Signaling, 2018 - Springer
shock proteins are multifunctional RNA/DNA binding proteins… involvement of cold shock
proteins in disease development … Furthermore, the potential application of cold shock proteins

Environmental cues induce a long noncoding RNA–dependent remodeling of the nucleolus

MD Jacob, TE Audas, J Uniacke… - Molecular biology of …, 2013 - Am Soc Cell Biol
… adaptation of the nucleolus, triggered by heat shock or physiological acidosis, that depends
on the expression of ribosomal intergenic spacer long noncoding RNA (IGS lncRNA). At the …

Chromatin remodeling complexes in the assembly of long noncoding RNA-dependent nuclear bodies

T Kawaguchi, T Hirose - Nucleus, 2015 - Taylor & Francis
… (PLD) containing RNA-binding proteins. We found that SWI/SNF chromatin remodeling
complexes function as paraspeckle components that interact with paraspeckle proteins (PSPs) …

[HTML][HTML] A stress response that monitors and regulates mRNA structure is central to cold shock adaptation

Y Zhang, DH Burkhardt, S Rouskin, GW Li… - Molecular cell, 2018 - cell.com
… that modulates translation of the cold-shock protein CspA. … The distribution of changes in
RNA structure level is shown in … , indicating a decrease in RNA structure level concomitant with …

Proteins that chaperone RNA regulation

SA Woodson, S Panja… - Microbiology …, 2018 - Am Soc Microbiol
RNA-binding proteins that “passively” remodel RNA structures without hydrolyzing ATP. In
bacteria, this type of passive RNA chaperone includes cold shock proteins (14), the Sm family …

Mechanisms of StpA-mediated RNA remodeling

M Doetsch, T Gstrein, R Schroeder, B Fürtig - RNA biology, 2010 - Taylor & Francis
… coli cold shock protein, CspA which also has RNA chaperone activity and regulates
transcription and translation.Citation18 Recently, it was noticed that mRNAs in E. coli stay at their …