The transcriptome of Verticillium dahliae-infected Nicotiana benthamiana determined by deep RNA sequencing

L Faino, R de Jonge, BPHJ Thomma - Plant signaling & behavior, 2012 - Taylor & Francis
… the Ve1 immune receptor, RNA-Seq was performed on samples … the samples for RNA-Seq
was Nicotiana benthamiana, which is … benthamiana is an Australian endemic tobacco species …

Comparative RNA-Seq analysis of Nicotiana benthamiana in response to Phytophthora parasitica infection

D Shen, C Chai, L Ma, M Zhang, D Dou - Plant growth regulation, 2016 - Springer
… p arasitica, differential gene expressions between inoculated and mock-treated Nicotiana
benthamiana leaves were analyzed by RNA-Seq approach. A total of 5375 and 3614 N. b …

De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

K Nakasugi, RN Crowhurst, J Bally, CC Wood… - PloS one, 2013 - journals.plos.org
Nicotiana benthamiana has been widely used for transient gene expression assays and as
… interactions, lipid engineering and RNA silencing pathways. Assembling the sequence of its …

Deep Sequencing–Based Transcriptome Profiling Reveals Comprehensive Insights into the Responses of Nicotiana benthamiana to Beet necrotic yellow vein virus …

H Fan, H Sun, Y Wang, Y Zhang, X Wang, D Li, J Yu… - PLoS one, 2014 - journals.plos.org
next-generation sequencing technologies to analyze the transcriptome profile of N. benthamiana
… Comparisons of the transcriptomes of mock, BN3 (RNAs 1+2+3 ), and BN34 (RNAs 1+2…

Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT

M Schiavinato, R Strasser, L Mach, JC Dohm… - BMC genomics, 2019 - Springer
… The allotetraploid tobacco species Nicotiana benthamiana native … benthamiana accessions
currently used in research lack … benthamiana we generated genomic sequencing data from …

Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

I Baksa, T Nagy, E Barta, Z Havelda, É Várallyay… - BMC genomics, 2015 - Springer
… The size distribution of sequenced small RNA reads. The size class distribution of redundant
and non redundant small RNA sequences in the twelve tissue samples. The percentage of …

A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly

M Goralski, P Sobieszczanska… - Plant Methods, 2016 - Springer
RNA sequencing (RNA-Seq) [4]. The latter technique directly reveals the sequence of …
result of continuous improvements in both the sequencing technology and the data analysis …

Identification of mRNAs that Move Over Long Distances Using an RNA-Seq Analysis of Arabidopsis/Nicotiana benthamiana Heterografts

M Notaguchi, T Higashiyama… - Plant and Cell …, 2015 - academic.oup.com
… the essential roles of proteins and RNA species. However, many … -graft system with Nicotiana
benthamiana as the recipient … known sequence motifs in promoter or transcript sequences

Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

K Li, G Wu, M Li, M Ma, J Du, M Sun, X Sun, L Qing - Virology journal, 2018 - Springer
… In this study, RNA-seq was used to analyze differentially expressed genes (DEGs) in N.
benthamiana plants infected by TbCSV (Y35A) and TbCSV … Materials for RNA sequencing

Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms

K Kurotani, H Hirakawa, K Shirasawa… - Plant and Cell …, 2023 - academic.oup.com
benthamiana to RNA viruses, we confirmed the sequence of the Rdr1 gene in the sequence
… No other sequences homologous to Rdr1 at the DNA sequence level were found in the …