[HTML][HTML] Issues with SARS-CoV-2 sequencing data
… or who rely on available SARS-CoV-2 genome sequences in … and masking alignments of
SARS-CoV-2 sequences. We also … and high rate of apparent sequencing/mapping errors. We …
SARS-CoV-2 sequences. We also … and high rate of apparent sequencing/mapping errors. We …
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities
… the production and handling of COVID-19-related sequencing data, and a detailed picture of
… of SARS-CoV-2 sequencing data and metadata. High-throughput sequencing for COVID-19 …
… of SARS-CoV-2 sequencing data and metadata. High-throughput sequencing for COVID-19 …
[HTML][HTML] Global landscape of SARS-CoV-2 genomic surveillance and data sharing
… We downloaded a total of 5.1 million SARS-CoV-2 sequences from public repositories
corresponding to samples collected between 1 December 2019 and 31 October 2021. After …
corresponding to samples collected between 1 December 2019 and 31 October 2021. After …
[HTML][HTML] Using big sequencing data to identify chronic SARS-Coronavirus-2 infections
… large volume of SARS-CoV-2 sequencing data and metadata to search for sequences that
are … Our approach relies on the idea that there is deposition of viral sequences and metadata …
are … Our approach relies on the idea that there is deposition of viral sequences and metadata …
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data
… SARS-CoV-2 sequence data sets worldwide to detect and quantify sgRNA. Here we applied
… to 1155 SARS-CoV-2 sequences from Sheffield, United Kingdom, and three data sets from …
… to 1155 SARS-CoV-2 sequences from Sheffield, United Kingdom, and three data sets from …
Insights from SARS-CoV-2 sequences
… tremendous amount of SARS-CoV-2 sequence data is publicly … to accumulate, SARS-CoV-2
sequence data and associated … evolution and adaptation of SARS-CoV-2. The volume of …
sequence data and associated … evolution and adaptation of SARS-CoV-2. The volume of …
Recovery of deleted deep sequencing data sheds more light on the early Wuhan SARS-CoV-2 epidemic
JD Bloom - Molecular Biology and Evolution, 2021 - academic.oup.com
… of SARS-CoV-2 remains shrouded in mystery. Here, I identify a data set containing SARS-CoV-2
sequences … been deleted from the NIH’s Sequence Read Archive. I recover the deleted …
sequences … been deleted from the NIH’s Sequence Read Archive. I recover the deleted …
[HTML][HTML] Genomic sequencing effort for SARS-CoV-2 by country during the pandemic
Y Furuse - International Journal of Infectious Diseases, 2021 - Elsevier
… SARS-CoV-2 infected cases but few published sequences, we observed good performance
on sequencing … Another caveat is that we did not check the quality of sequence data such as …
on sequencing … Another caveat is that we did not check the quality of sequence data such as …
[HTML][HTML] An integrated national scale SARS-CoV-2 genomic surveillance network
T COVID - The Lancet. Microbe, 2020 - ncbi.nlm.nih.gov
… of sequence data, we are creating an integrated dataset connecting viral genome data with
multidimensional patient data from … Each week a sequence data cutoff is applied across the …
multidimensional patient data from … Each week a sequence data cutoff is applied across the …
CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants
… SARS-CoV-2 variants around the globe. The website offers users a convenient way to assess
the available SARS-CoV-2 sequencing data … based on globally shared data. As mentioned…
the available SARS-CoV-2 sequencing data … based on globally shared data. As mentioned…
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