A multiscale coarse-grained model of the SARS-CoV-2 virion

A Yu, AJ Pak, P He, V Monje-Galvan, L Casalino… - Biophysical journal, 2021 - cell.com
SARS-CoV-2 proteins, which were then assembled into a complete virion model. We
describe how CG molecular interactions can be derived from all-atom simulations, how viral

Structure and function of major SARS-CoV-2 and SARS-CoV proteins

R Gorkhali, P Koirala, S Rijal… - … and biology insights, 2021 - journals.sagepub.com
… of SARS-CoV ORF3a protein with other proteins of the virus uncovered that it interacts with
structural proteins like S and M in the Golgi apparatus, which is close to site of virus assembly

SARS-CoV envelope protein palmitoylation or nucleocapid association is not required for promoting virus-like particle production

YT Tseng, SM Wang, KJ Huang, CT Wang - Journal of biomedical science, 2014 - Springer
… bond formation plays a role in SARS-CoV virus assembly. … SARS-CoV N is released from
cells through an association … is not required for SARS-CoV virus assembly. We found that …

The SARS-CoV-2 nucleocapsid protein and its role in viral structure, biological functions, and a potential target for drug or vaccine mitigation

Z Bai, Y Cao, W Liu, J Li - Viruses, 2021 - mdpi.com
… As summarized in this article, numerous studies on the N protein of SARS-CoV-2 to
investigate the role of the N protein in viral assembly, replication, and the host immune response …

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

PT Truong Nguyen, I Plyusnin, T Sironen… - BMC …, 2021 - Springer
… surveillance of virus variants by sequencing the SARS-CoV-… consensus assembly and lineage
assignment for SARS-CoV-… quick reference-based consensus assembly from short reads …

[HTML][HTML] Assembly of SARS-CoV-2 ribonucleosomes by truncated N∗ variant of the nucleocapsid protein

AN Adly, M Bi, CR Carlson, AM Syed, A Ciling… - Journal of Biological …, 2023 - ASBMB
… at sites of viral assembly. The N protein accumulates in the cytoplasm at RTCs, where it
likely plays a role in subgenomic transcription, and at nearby sites of viral assembly, where it …

PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification

RRM Oliveira, TC Negri, G Nunes, I Medeiros, G Araújo… - PeerJ, 2022 - peerj.com
assembled sequences. To combine both advantages of using de novo and reference-based
assembly … that provides assembly to variant identification of SARS-CoV-2 viruses. PipeCoV …

The molecular biology of SARS coronavirus

N Satija, SK Lal - Annals of the New York Academy of Sciences, 2007 - Wiley Online Library
… It has been shown to interact with M, E, and S proteins suggesting that it may play a role in
viral assembly and/or release of virus from infected cells. Also it has been shown to form ion …

More or less deadly? A mathematical model that predicts SARS-CoV-2 evolutionary direction

Z Xu, D Wei, Q Zeng, H Zhang, Y Sun… - Computers in Biology …, 2023 - Elsevier
… It is of great value to predict the evolutionary direction of SARS-CoV-2. In this paper, we …
trend of SARS-CoV-2. We focus on the mutational effects on viral assembly capacity. A robust …

A comprehensive review about SARS-CoV-2

SKM Haque, O Ashwaq, A Sarief… - Future …, 2020 - Taylor & Francis
SARS-CoV-2 has been given this name because it is 85% similar to the SARS-CoV virus
The S protein enters virions at this point, which is not needed for assembly since the M protein …