Revealing lncRNA structures and interactions by sequencing-based approaches

X Qian, J Zhao, PY Yeung, QC Zhang… - Trends in biochemical …, 2019 - cell.com
… of lncRNA in gene expression and RNA metabolism, as well as in development and disease.
In this review, we summarize the latest sequencing … to map functional lncRNAs. We discuss …

[HTML][HTML] Identification and Functional Analysis of LncRNAs in Response to Seed Aging in Metasequoia glyptostroboides by Third Generation Sequencing Technology

Y Luo, J Le, Y Zhang, R Wang, Q Li, X Lu, J Liu, Z Deng - Forests, 2022 - mdpi.com
… In this study, we used the SMRT sequencing technology of the PacBio platform to perform …
sequencing, and combined with illumina high-throughput short-read sequencing technology to …

The how and why of lncRNA function: an innate immune perspective

EK Robinson, S Covarrubias, S Carpenter - Biochimica et Biophysica Acta …, 2020 - Elsevier
response of murine macrophages offers a powerful system for applying genomic approaches
for studying novel lncRNAs … initially identified following RNA-sequencing to examine their …

[HTML][HTML] Third-Generation Sequencing Reveals LncRNA-Regulated HSP Genes in the Populus x canadensis Moench Heat Stress Response

J Xu, M Fang, Z Li, M Zhang, X Liu, Y Peng… - Frontiers in …, 2020 - frontiersin.org
… of lncRNAs. In this study, we used third-generation long-read sequencing technology with
… to explore the role of lncRNAs in the heat stress response of Populus x canadensis Moench …

[HTML][HTML] Implication of Long noncoding RNAs in the endothelial cell response to hypoxia revealed by RNA-sequencing

C Voellenkle, JM Garcia-Manteiga, S Pedrotti… - Scientific reports, 2016 - nature.com
… that certain lncRNAs play a significant role in the hypoxic response of ECs. The first lncRNA
to be … In this study, the power of next-generation sequencing technology was employed to …

[HTML][HTML] Survey of high throughput RNA-Seq data reveals potential roles for lncRNAs during development and stress response in bread wheat

Shumayla, S Sharma, M Taneja, S Tyagi… - Frontiers in Plant …, 2017 - frontiersin.org
… processes and stress responses. Recent advances in sequencing technology and computational
methods enabled identification and characterization of lncRNAs in certain plant species…

Platforms for investigating LncRNA functions

JL Charles Richard… - SLAS TECHNOLOGY …, 2018 - journals.sagepub.com
sequencing technologies serving different applications. RNA sequencing and next-generation
sequencing technologies are … into appropriate transcriptional responses. The identification …

Technological developments in lncRNA biology

S Jathar, V Kumar, J Srivastava, V Tripathi - Long Non Coding RNA …, 2017 - Springer
sequencing technologies (deep sequencing, CAGE, nanoCAGE and CAGEscan) and identified
several thousand novel lncRNAs… synthesized RNAs and in response to cross-linking with …

lncRNAs in stress response

S Valadkhan, A Valencia-Hipólito - Long non-coding RNAs in human …, 2015 - Springer
response. Although our understanding of the contribution of lncRNAs to the cellular stress
response is … bacterial sequences can strongly affect the regulation of the eukaryotic heat shock …

Emerging roles of long non-coding RNAs in plant response to biotic and abiotic stresses

N Nejat, N Mantri - Critical reviews in biotechnology, 2018 - Taylor & Francis
… Several informative and valuable databases have been developed for storing lncRNA
sequences and to provide … Below, we discuss the role of plant lncRNAs in response to stresses. …