Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change

Q Xu, Z Song, C Zhu, C Tao, L Kang, W Liu, F He… - BMC Plant …, 2017 - Springer
… In response to new environment, lncRNAs may be more … the roles of lncRNAs in plant stress
responses. Such information … To gain enough sequencing data for lncRNA assembly, we …

Next generation deep sequencing identified a novel lncRNA n375709 associated with paclitaxel resistance in nasopharyngeal carcinoma

S Ren, G Li, C Liu, T Cai, Z Su, M Wei… - Oncology …, 2016 - spandidos-publications.com
… to validate the exact function of these known and novel lncRNAs in paclitaxel resistance. …
of NGS technology (22). However, NPC is not suitable for surgery and shows high response to …

Long non-coding RNAs and the innate immune response

MR Hadjicharalambous, MA Lindsay - Non-coding RNA, 2019 - mdpi.com
… this emerging role of lncRNA in the innate immune response. … Currently there are 16,066
lncRNA genes and 29,566 lncRNAsequencing data has meant that the number of lncRNAs

Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

S Müller, S Raulefs, P Bruns, F Afonso-Grunz… - Molecular cancer, 2015 - Springer
… To better understand the aggressive growth and the poor response of PDAC to … The application
of NGS technologies such as RNA-seq, whole exome sequencing or bisulfite sequencing

RNA sequencing and co-expressed long non-coding RNA in modern and wild wheats

HB Cagirici, B Alptekin, H Budak - Scientific reports, 2017 - nature.com
lncRNAs that were homologous to those lncRNAs in A. thaliana, suggesting the weak
conservation of lncRNAs … knowledge of lncRNAs and their regulatory roles in drought response in …

Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation

UC Jha, H Nayyar, R Jha, M Khurshid, M Zhou… - BMC Plant …, 2020 - Springer
… Here, we explain the types and functions of lncRNAs and update the roles of various lncRNAs,
their … , which explains the rapid evolution of lncRNA sequences. Conservation analysis of …

Analysis of lncRNA expression profiles by sequencing reveals that lnc-AL928768. 3 and lnc-AC091493. 1 are novel biomarkers for disease risk and activity of …

L Sun, J Tu, C Liu, A Pan, X Xia, X Chen - Inflammopharmacology, 2020 - Springer
… the lncRNA expression profiles using RNA sequencing in … understanding the correlation of
lncRNA expression profiles with … lncRNA levels with treatment response was not investigated. …

Long non-coding RNA in plants in the era of reference sequences

H Budak, SB Kaya, HB Cagirici - Frontiers in Plant Science, 2020 - frontiersin.org
… -like structures and gene regulatory functions in plant stress responses. While RNA sequencing
has been commonly used for mining lncRNAs, a lack of widespread conservation at the …

Long non-coding RNAs discriminate the stages and gene regulatory states of human humoral immune response

X Agirre, C Meydan, Y Jiang, L Garate… - Nature …, 2019 - nature.com
lncRNAs and 4845 annotated lncRNAs, thus defining the extent of non-coding RNA in the B
cell humoral immune response (… of RNA-sequencing (RNA-seq) data for all a lncRNAs and b …

Single-cell RNA sequencing integrated with bulk RNA sequencing analysis identifies a tumor immune microenvironment-related lncRNA signature in lung …

Y Ren, R Wu, C Li, L Liu, L Li, S Weng, H Xu, Z Xing… - BMC biology, 2024 - Springer
response To explore the association between TRLS and immunotherapeutic response, we
… lower T cell dysfunction levels and elevated response to immunotherapy (P < 0.0001) (Fig. 5F…