[HTML][HTML] shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R
… shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …
shinyÉPICo: a graphical pipeline to analyze Illumina DNA methylation arrays
O Morante-Palacios, E Ballestar - Bioinformatics, 2021 - academic.oup.com
… interactive and graphical tools for DNA methylation array analysis. For example, shinyMethyl
can be used to visualize quality control … in PDF format, the R objects of the analysis and a …
can be used to visualize quality control … in PDF format, the R objects of the analysis and a …
[PDF][PDF] shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R [v2; ref status: indexed
… shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …
DNA Methylation: Methods and Analyses
TJ Gorrie-Stone - 2019 - repository.essex.ac.uk
… of quality control, the first using the shinyMethyl R package … MethylAid and shinyMethyl both
offer interactive GUIs for the … of the BeadStudio software of Illumina) and wateRmelon (the …
offer interactive GUIs for the … of the BeadStudio software of Illumina) and wateRmelon (the …
[PDF][PDF] shinyMethyl: interactive visualization of Illumina 450K methylation arrays
… The goal of shinyMethyl is two-fold: (1) summarize a high… 450K array experiment into an
exportable small-sized R object and (2) launch an interactive visualization tool for quality control …
exportable small-sized R object and (2) launch an interactive visualization tool for quality control …
methylR: a graphical interface for comprehensive DNA methylation array data analysis
… is designed for Illumina DNA methylation array data analysis, … through Bioconductor that
perform quality control, variance … 2015) R packages to provide clear and interactive graphical …
perform quality control, variance … 2015) R packages to provide clear and interactive graphical …
[PDF][PDF] methylation arrays in R [version 1; peer review: 2 approved]
… shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays… , shinyMethyl offers three interactive plots for quality control. These …
from Illumina 450k arrays… , shinyMethyl offers three interactive plots for quality control. These …
[PDF][PDF] MethylAid: Visual and Interactive qual-ity control of Illumina Human DNA Methylation array data
M van Iterson, D Cats, B Heijmans - 2019 - s3.jcloud.sjtu.edu.cn
… shinyMethyl allows quality control assessment and interactive exploration of 450k array data
in … After summarization the data can be loaded into R and passed to visualize for interactive …
in … After summarization the data can be loaded into R and passed to visualize for interactive …
[PDF][PDF] Statistical methods for epigenetic data and structural magnetic resonance imaging
JP Fortin - 2016 - jscholarship.library.jhu.edu
… Finally, we present shinyMethyl, a Bioconductor package for interactive quality control of
DNA methylation data from the Illumina 450k array. … in all datasets passed our quality control. …
DNA methylation data from the Illumina 450k array. … in all datasets passed our quality control. …
[HTML][HTML] Identifying mislabeled and contaminated DNA methylation microarray data: an extended quality control toolset with examples from GEO
JA Heiss, AC Just - Clinical epigenetics, 2018 - Springer
… We describe a set of quality checks for the popular Illumina 450K and EPIC microarrays to
… probes visually are provided in the minfi [9], RnBeads [10] and shinyMethyl [11] R packages. …
… probes visually are provided in the minfi [9], RnBeads [10] and shinyMethyl [11] R packages. …