… peptide a rank score for each server and allele. In this case, we assigned the peptide with the
strongest predicted binding a rank score … , for many peptides, all methods make very similar …

… The analysis was done in a similar manner to what we described above, but in addition we
… peptides to multiple MHC molecules, we recommend the use of percentile rank scores rather …

… , on the basis of neighboring MHC bearing the highest sequence similarity. Pan-allele methods
exhibited … The reweighted scores, comprised of MHC protein energy, peptide energy, and …

… peptide–MHC class II binding are typically similar, if not identical, to methods for predicting
peptide–MHC … is applied to peptides with multiple registers, the highest score among the …

… we will carry out a similar process of exchanging peptides and reagents to ensure consistency
… 3-D structure of the MHC molecules was used to derive scoring matrices. References with …

… peptide-MHC binding scores could provide contributing evidence to establish a protein’s
potential as a vaccine. Using T-Cell MHC … allele, have similar numbers of binding peptides and …

… with different approaches to removing similar peptides. … experimentally measured, MHC class
II peptide binding affinities … the MHC class II binding affinity datasets, the prediction scores, …

… Evaluating such predictors, we find that the integrative model with similar weight on affinity …
peptide, the predicted stability score, converted half-life in hours, and a percentile rank score. …

… a peptide ligand, we use information derived from similar protein … similarity score is 1 for
identical sequences, and can be negative for highly dissimilar sequences. If the similarity score …

… Our motif mining method (MHC-PPM) is similar to temporal event mining in time-related …
After scoring every peptide in the training data, any peptide scoring below a predefined …