… response is the recognition of peptides presented by MHC (Major … the extreme variety of
peptides presented by the MHC, the … of the negative prediction scores for the given peptide for all …

… produces a reliability score for the optimal register of each predicted binder as part of its
prediction. For the 51 peptide-MHCs in Tables 1 and 2, sorted by reliability scores, we observe …

… Thus, the final dataset included 1,948 peptide-MHC … the average similarity between a set
of 9-mer peptide pairs with … by a lower self-similarity score compared to IB neoepitopes (P = …

… In contrast, physics-based scoring functions combined with … peptide lengths and MHC
allotypes, for use in vaccine design. … residues, which cause the peptide backbone to adopt similar …

… with additional details about the score and the social media … similar training data are
unavailable for a specific MHC allele, … of 12 diverse peptides bound by a class I MHC molecule …

… find promiscuous peptides that bind to a series of MHC variants… of a peptide was calculated
as the score of the highest scoring … that a similar approach can be applied to the MHC class II …

… on MHC ligand data (peptides eluted from MHC complexes … peptide score within the peptide,
where a nonamer peptide … We adopt a similar approach, to improve the performance of …

… foreign and self-peptides are able to form peptide:MHC complexes (pMHC). Presentation of
… coefficients between their relative SFU and our peptide similarity score were: 0.40, 0.39, and …

… We can then estimate the PEP of an individual peptide’s predicted score, and conversely …
suggest that MHCflurry gives similar strong performance for peptide binding prediction; we thus …

… peptide-MHC binding data (NetMHCIIpan), and concluded that the unsupervised clustering
gave solutions reasonably similar … assignment, scores and alignment core of each peptide. …