… peptides that have similar … scoring mechanism that accounts for both aspects of immune
recognition, combining the EpiMatrix epitope predictor (to identify peptides that are good MHC …

… we also seek a matrix or profile similar to M (p,a), but with the fundamental difference that …
the computed interaction scores suggested in the present study, a set of peptides for which the …

… recognize peptide–MHC complexes on the surface of antigen-presenting cells. Peptides
presented by MHC … The similarity is 1 if the two HLA molecules are predicted to have a perfectly …

… a peptide plays a principle role in peptide and MHC-II binding, and this segment is named
‘binding core’ [2]. Most efforts have been made on how to align the peptides … similarity scores. …

… set of data in which each peptide sequence has its own real-valued true score of binding to
… predicted by the HMMs are limited to those having patterns similar to existing patterns having …

… I MHC molecules recognize peptides of 9 to 10 residues in length and carrying residues with
similar … was available for sets of peptides with poorer scores, it was found that peptides with …

… , where each peptide has multiple options for MHC restriction)… binding peptides of length
10 shows the similar preference. … 1000 peptides in each tool according to the predicted scores …

… Similar to MHC-I … peptide sequence was evaluated using different scoring functions, including
a variety of sequence-based methods and a structure-based scoring function, X-score [142]…

… peptide database search algorithms and scoring, not only for MHC peptides but also for other
nontryptic peptide … However, we feel this algorithm (or similar) is important to be aware of …

… , the MHC II binding cleft is loaded with peptide fragments of … a scoring scheme where the
score of a given peptide was … A similar enrichment has been observed downstream of the …