… protein structures simultaneously by iterative conformational sampling, unlike GalaxyRefine,
which was limited to local refinement… (18) and CASP13 refinement experiments. This server …

… In this study, we describe a new automatic refinement server method designed to improve
… overall structure simultaneously. Locally inaccurate regions may occur in protein structures …

… we employ a structure-based potential with the unbound protein structure as reference, …
approach by refining rigid body docking candidates of a large number of protein complexes. …

… improved the agreement, and therefore the structure quality, even further. Upon simultaneous
refinement, a satisfactory low Q RDC was also obtained for the proteins cMMP1 and Ub …

… of ensembles of protein conformations that represent simultaneously the native structure and
its … Finally, dynamic-ensemble refinement should substantially enhance our ability to design …

… refinement cycle provides an approach for simultaneous assignment and structure refinement
(SASR) of proteins … with data from two integral membrane proteins, one α-helical and one β…

… crystals of two distinct proteins: a highly flexible protein, neurotrophin-3… simultaneously
refine 10 copies of the protein against the diffraction data. The final refined ensemble of structures …

… protein model47 simultaneous refinement of both the global topologies and local structural
qualities of a protein structure … -18 majority of the structure refinement protocols fail to achieve …

… Some of us have thus recently developed an approach (REFMAC-NMR) based on the
simultaneous refinement of structural models against X-ray and NMR experimental data. (32) This …

… 13, 14, but here we focus on near native structural refinement and the metric training allows
us to work on many (here 924 nonhomologous) proteins and all their decoys simultaneously. …