过去一年中添加的文章,按日期排序

Antibody-SGM, a Score-Based Generative Model for Antibody Heavy-Chain Design

X Xie, PA Valiente, JS Lee, J Kim… - Journal of Chemical …, 2024 - ACS Publications
9 天前 - … antibody heavy chains by refining the generation to … simultaneous sequence and
structure optimization. These improvements demonstrate the promise of our strategy for protein

Phylogenetic analysis of Centralspindlin and Ect2 provides mechanistic insights into the emergence of Metazoa and multicellularity

M Glotzer - bioRxiv, 2024 - biorxiv.org
19 天前 - … specifying each protein was present in two copies [46]. Predictions were refined
by trimming the predicted unstructured termini. If the regions of the proteins were scored with …

The dimer effect: A refinement approach towards skin sensitization assessment in‐chemico using Amino acid Derivative Reactivity Assay

R Paul Choudhury, A Singh, E Mathai… - Journal of Applied …, 2024 - Wiley Online Library
33 天前 - … and structural confirmation of the dimer of N-(2-[1-naphthyl]acetyl)-L-cysteine (NAC)
from the ADRA assay to allow simultaneous … Thus, this simultaneous assay gives a more …

Unleashing the Power of Evolution in Xylanase Engineering: Investigating the Role of Distal Mutation Regulation

Y Wu, Y Yang, G Lu, WL Xiang, TY Sun… - Journal of Agricultural …, 2024 - ACS Publications
36 天前 - … Notably, mutations in this region simultaneously boosted … by various structural
regions of proteins and expands our … Initial structures were optimally refined using Amber 22 …

Refinement of Docked Protein-Protein Complexes Using Repulsive Scaling Replica Exchange Simulations

T Siebenmorgen, Y Saremi Nanji… - Protein-Protein Docking …, 2024 - Springer
57 天前 - … -based scheme to simultaneously refine and score protein-protein complexes [13]. …
structures. However, it offers a route for refinement and a realistic ranking of predicted protein

Extraction of Protein-Enriched Fractions from Sunflower and Hemp Seeds: Composition and Colloidal Stability of Less Refined Fractions as a Function of Initial Ph

SB Alpiger, SB Gregersen, AM Ellermann… - Available at SSRN … - papers.ssrn.com
89 天前 - Simultaneous extraction of oil and protein from oilseeds using aqueous extraction
combined with wet 18 milling yields protein concentrates with less refined compositions. This …

Achievement of waste sludge deep dehydration under acidic conditions with polydimethyldiallylammonium chloride and ferric chloride: performance and mechanism

YT Lv, K Wang, J Liu, X Wang, L Li, J Qiu, L Wang - RSC advances, 2024 - pubs.rsc.org
120 天前 - … , simultaneously disrupting the floc structure and refining the sludge. Subsequently,
FeCl 3 reconstructs these elements, forming larger particle sizes. Finally, hydrochloric acid …

RING 4.0: faster residue interaction networks with novel interaction types across over 35,000 different chemical structures

A Del Conte, GF Camagni, D Clementel… - Nucleic Acids …, 2024 - academic.oup.com
128 天前 - … all types of interactions simultaneously in the structure viewer and … refined. RING
4.0 can now provide comprehensive interaction networks for various combinations of proteins, …

ART-SM: Boosting Fragment-based Backmapping by Machine Learning

C Pfaendner, V Korn, P Gogoi, B Unger, K Pluhackova - 2024 - chemrxiv.org
132 天前 - … conformations per fragment to simultaneously reflect the coarse-grained structure
and the Boltzmann distribution. Additionally, we introduce a novel refinement step to connect …

Molecular simulations to investigate the impact of N6-methylation in RNA recognition: Improving accuracy and precision of binding free energy prediction

V Piomponi, M Krepl, J Sponer, G Bussi - arXiv preprint arXiv:2404.14821, 2024 - arxiv.org
135 天前 - … calculations, we refine the m6A partial charges parameters, thereby enabling the
simultaneous reproduction of N6 methylation on both the protein binding free energy and the …