SNP discovery via 454 transcriptome sequencing
WB Barbazuk, SJ Emrich, HD Chen, L Li… - The plant …, 2007 - Wiley Online Library
… of higher error rates than Sanger sequencing. Even so, … sequencing to achieve high-throughput
SNP discovery. Over 260 000 Mo17 ESTs were obtained from a single GS-20 sequencer …
SNP discovery. Over 260 000 Mo17 ESTs were obtained from a single GS-20 sequencer …
Transcriptome sequencing for SNP discovery across Cucumis melo
… Although it is necessary to validate by sequencing or genotyping these in silico- detected
SNPs, our results confirm that resequencing strategy provides a large catalog of alleles in …
SNPs, our results confirm that resequencing strategy provides a large catalog of alleles in …
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
M Trick, Y Long, J Meng… - Plant biotechnology journal, 2009 - Wiley Online Library
… that Solexa sequencing of the transcriptome is an efficient method for the identification of
sequence variation between oilseed rape lines. We have shown that the sequence variation is …
sequence variation between oilseed rape lines. We have shown that the sequence variation is …
SNP discovery in the bovine milk transcriptome using RNA-Seq technology
A Cánovas, G Rincon, A Islas-Trejo… - Mammalian …, 2010 - Springer
… discover coding SNPs. The objective of this study was to perform a SNP discovery analysis
in the milk transcriptome … cows were analyzed by sequencing cDNAs using the Illumina …
in the milk transcriptome … cows were analyzed by sequencing cDNAs using the Illumina …
SNP discovery by transcriptome pyrosequencing
WB Barbazuk, PS Schnable - cDNA Libraries: Methods and Applications, 2011 - Springer
… SNPs requires genomic or transcriptome sequences from multiple genotypes. While automated
Sanger sequencing … costly to acquire deep Sanger sequence from several genotypes. …
Sanger sequencing … costly to acquire deep Sanger sequence from several genotypes. …
SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)
… SNP discovery in a non-model marine fish based on transcriptome sequencing using NGS.
… The use of transcriptome sequencing in this study has resulted in only a few per cent of the …
… The use of transcriptome sequencing in this study has resulted in only a few per cent of the …
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.
… transcriptome sequences of the four accessions sequenced in this study were compared to
the custom reference, and omitting SNPs … heterozygous SNPs, a total of 27,302 SNPs were …
the custom reference, and omitting SNPs … heterozygous SNPs, a total of 27,302 SNPs were …
SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing
Y Yu, J Wei, X Zhang, J Liu, C Liu, F Li, J Xiang - PloS one, 2014 - journals.plos.org
… , SNPs were discovered based on two transcriptomes of Litopenaeus vannamei (L. vannamei)
generated from Illumina sequencing … Recently, transcriptome sequencing has become the …
generated from Illumina sequencing … Recently, transcriptome sequencing has become the …
Approaches to variant discovery for conifer transcriptome sequencing
… During the development and evaluation of the various SNP discovery … SNP discovery, and
we are starting to see this approach of applying multiple variant calling tools to a sequencing …
we are starting to see this approach of applying multiple variant calling tools to a sequencing …
A high-throughput SNP discovery strategy for RNA-seq data
Y Zhao, K Wang, W Wang, T Yin, W Dong, C Xu - BMC genomics, 2019 - Springer
… The basic procedures for converting raw data generated from whole genome or
transcriptome sequencing into a final SNP result include obtaining raw data from NGS platforms, …
transcriptome sequencing into a final SNP result include obtaining raw data from NGS platforms, …
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