SNP discovery via 454 transcriptome sequencing

WB Barbazuk, SJ Emrich, HD Chen, L Li… - The plant …, 2007 - Wiley Online Library
… of higher error rates than Sanger sequencing. Even so, … sequencing to achieve high-throughput
SNP discovery. Over 260 000 Mo17 ESTs were obtained from a single GS-20 sequencer

Transcriptome sequencing for SNP discovery across Cucumis melo

J Blanca, C Esteras, P Ziarsolo, D Pérez… - BMC genomics, 2012 - Springer
… Although it is necessary to validate by sequencing or genotyping these in silico- detected
SNPs, our results confirm that resequencing strategy provides a large catalog of alleles in …

Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing

M Trick, Y Long, J Meng… - Plant biotechnology journal, 2009 - Wiley Online Library
… that Solexa sequencing of the transcriptome is an efficient method for the identification of
sequence variation between oilseed rape lines. We have shown that the sequence variation is …

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

A Cánovas, G Rincon, A Islas-Trejo… - Mammalian …, 2010 - Springer
discover coding SNPs. The objective of this study was to perform a SNP discovery analysis
in the milk transcriptome … cows were analyzed by sequencing cDNAs using the Illumina …

SNP discovery by transcriptome pyrosequencing

WB Barbazuk, PS Schnable - cDNA Libraries: Methods and Applications, 2011 - Springer
SNPs requires genomic or transcriptome sequences from multiple genotypes. While automated
Sanger sequencing … costly to acquire deep Sanger sequence from several genotypes. …

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

SJ Helyar, MT Limborg, D Bekkevold, M Babbucci… - 2012 - journals.plos.org
SNP discovery in a non-model marine fish based on transcriptome sequencing using NGS.
… The use of transcriptome sequencing in this study has resulted in only a few per cent of the …

Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.

R Chopra, G Burow, A Farmer, J Mudge… - Molecular Genetics and …, 2015 - Springer
transcriptome sequences of the four accessions sequenced in this study were compared to
the custom reference, and omitting SNPs … heterozygous SNPs, a total of 27,302 SNPs were …

SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing

Y Yu, J Wei, X Zhang, J Liu, C Liu, F Li, J Xiang - PloS one, 2014 - journals.plos.org
… , SNPs were discovered based on two transcriptomes of Litopenaeus vannamei (L. vannamei)
generated from Illumina sequencing … Recently, transcriptome sequencing has become the …

Approaches to variant discovery for conifer transcriptome sequencing

E Telfer, N Graham, L Macdonald, S Sturrock… - PLoS …, 2018 - journals.plos.org
… During the development and evaluation of the various SNP discoverySNP discovery, and
we are starting to see this approach of applying multiple variant calling tools to a sequencing

A high-throughput SNP discovery strategy for RNA-seq data

Y Zhao, K Wang, W Wang, T Yin, W Dong, C Xu - BMC genomics, 2019 - Springer
… The basic procedures for converting raw data generated from whole genome or
transcriptome sequencing into a final SNP result include obtaining raw data from NGS platforms, …