… We studied the phylogenetic relationships and genetic diversity of 158 O. linearis and O.…
morphological traits and RAD-seq-generated SNPs to discover phenotypic and genome-wide …

… the SSR- and SNP-based phylogenetic relationships between these 15 cultivars… markers.
The correlation coefficient between genetic distances based on SSR and those based on SNP …

… DNA markers has been used to study the classification of Citrus genus, and phylogenetic
relationships … A total of 135 polymorphic amplicons were observed in CAPS-SNP markers with …

… relationships with their relatives, the nuclear and chloroplast SSRs and SNP/InDel marker
were employed to evaluate the genetic diversity and analyze the phylogenic relationships of …

… A set of 759,237 high-quality single-nucleotide polymorphisms was identified and used to
assess the phylogenetic relationships. Population structure and phylogenetic tree analyses …

… studies using thousands of genome-wide markers identified with GBS. To evaluate the
robustness of the phylogenetic analysis we compared different SNP calling methods that rely on …

… In addition to the identification of useful intra- and interspecific SNP and indel markers, this
study addresses the following questions: (1) What are the phylogenetic relationships at the …

… been proposed for SNP data, we test whether different alignments and phylogenetic
approaches produce similar results. We also examined how the process of SNP identification and …

… phylogenetic relationships when comparing the largest data sets (584 gene sequences versus
2,670 SNPs); however, the phylogeny estimated from the SNP data … among the SNP trees …

… To date, genome wide SNP markers have not been used to understand the … and phylogenetic
relationship among the Oryza species using a genome-wide 384-plex GoldenGate SNP …