Differential geometry based solvation model I: Eulerian formulation
… formulation. However, this approach does not work directly in our formulation because no
sharp solvent–… Additionally, for practical purpose, we need an appropriate Eulerian formulation …
sharp solvent–… Additionally, for practical purpose, we need an appropriate Eulerian formulation …
Minimization and Eulerian formulation of differential geormetry based nonpolar multiscale solvation models
Z Chen - Computational and Mathematical Biophysics, 2016 - degruyter.com
… Second, we present an Eulerian formulation of differential geometry based nonpolar solvation
model … and Eulerian formulations. Third, we look into the distinction between phase field …
model … and Eulerian formulations. Third, we look into the distinction between phase field …
Differential geometry based solvation model. III. Quantum formulation
… By using the Euler-Lagrange variation, we derive a system of three coupled governing
equations, ie, the generalized Poisson-Boltzmann equation for the electrostatic potential, the …
equations, ie, the generalized Poisson-Boltzmann equation for the electrostatic potential, the …
Pseudo‐time‐coupled nonlinear models for biomolecular surface representation and solvation analysis
S Zhao - International Journal for Numerical Methods in …, 2011 - Wiley Online Library
… model for biomolecular surface representation and solvation analysis. Based on the Eulerian
formulation, the … In explicit solvent models, the solvent is represented in molecular or atomic …
formulation, the … In explicit solvent models, the solvent is represented in molecular or atomic …
Operator splitting ADI schemes for pseudo-time coupled nonlinear solvation simulations
S Zhao - Journal of Computational Physics, 2014 - Elsevier
… In Section 2, we first introduce the pseudo-transient solvation model in the Eulerian
formulation. The proposed time splitting ADI schemes will then be formulated for solving the …
formulation. The proposed time splitting ADI schemes will then be formulated for solving the …
[HTML][HTML] Parameter optimization in differential geometry based solvation models
… Our DG-based solvation models have been implemented in the Eulerian formulation, where
the solvent-solute interface is embedded in the three-dimensional (3D) Euclidean space …
the solvent-solute interface is embedded in the three-dimensional (3D) Euclidean space …
Variational approach for nonpolar solvation analysis
… been carried out to practically implement differential geometry based solvation models in the
Eulerian representation, 45 Lagrangian representation, 46 and quantum formulation. These …
Eulerian representation, 45 Lagrangian representation, 46 and quantum formulation. These …
Parameterization of a geometric flow implicit solvation model
… of the implicit solvent model (surface tension, dielectric coefficient, solvent pressure, etc.) and
do … For Eulerian formulations of the geometric flow problem,[6] S varies smoothly across the …
do … For Eulerian formulations of the geometric flow problem,[6] S varies smoothly across the …
A solvation‐free‐energy functional: A reference‐modified density functional formulation
T Sumi, A Mitsutake, Y Maruyama - Journal of computational …, 2015 - Wiley Online Library
… solvated state in solution and the unsolvated state in vacuum, that is, ΔG solv .1, 2 We can
categorize the phenomena of solvation … the solute from the pure solvent to the solution system …
categorize the phenomena of solvation … the solute from the pure solvent to the solution system …
Differential geometry based solvation model II: Lagrangian formulation
… required by the Eulerian representation in solvation analysis. … Eulerian and Lagrangian
formalisms of the solvation model. … the differential geometry based solvation model. The present …
formalisms of the solvation model. … the differential geometry based solvation model. The present …
相关搜索
- implicit solvent models
- differential geometry based solvation model
- hybrid solvation model
- density functional solvation model
- universal solvation models
- polarizable continuum solvation model
- solvation modeling electrostatic contribution
- solvation modeling impact of surface area
- dispersion attraction solvation models
- continuum solvation models dispersion energies
- variational implicit solvent modeling coulomb field
- poisson boltzmann equation continuum solvation model
- parameter optimization solvation models
- solvent model small molecules
- biomolecular solvation constrained variational model
- solvation model lagrangian formulation