The impact of surface area, volume, curvature, and lennard–jones potential to solvation modeling
… solvation models. Our numerical results reveal that the LJ potential plays a vital role in nonpolar
solvation modeling, … -based nonpolar solvation models offer some of the best solvation …
solvation modeling, … -based nonpolar solvation models offer some of the best solvation …
Calculation of solvation free energies using a density functional/molecular dynamics coupled potential
RV Stanton, DS Hartsough… - The Journal of Physical …, 1993 - ACS Publications
… and molecular mechanical computational models. Herein, we … -Jones parameters:10 The
solvation free energies for fluoride and sodium were also examined. In both cases the solvation …
solvation free energies for fluoride and sodium were also examined. In both cases the solvation …
Density-dependent solvation dynamics in a simple Lennard-Jones fluid
M Marques Martins, H Stassen - The Journal of chemical physics, 2003 - pubs.aip.org
… The exponential decay times for the solvation model are larger than for the solvation models
… In the case of the potential contribution to the Green–Kubo tcf for the shear viscosity, the …
… In the case of the potential contribution to the Green–Kubo tcf for the shear viscosity, the …
Solvation free energies for periodic surfaces: comparison of implicit and explicit solvation models
… accurate gas-phase dipole moments and are used in the SM12 implicit solvation model.
Please note that the Lennard-Jones parameters for water are similar for TIP3P and UFF: the O–…
Please note that the Lennard-Jones parameters for water are similar for TIP3P and UFF: the O–…
Density functional theory of solvation and its relation to implicit solvent models
R Ramirez, D Borgis - The Journal of Physical Chemistry B, 2005 - ACS Publications
We describe a density functional theory approach to solvation in molecular solvents. The
solvation free energy of a complex solute can be obtained by direct minimization of a density …
solvation free energy of a complex solute can be obtained by direct minimization of a density …
Advances and challenges in modeling solvated reaction mechanisms for renewable fuels and chemicals
Y Basdogan, AM Maldonado… - Wiley Interdisciplinary …, 2020 - Wiley Online Library
… conditions, we then summarize how solvation can be modeled with quantum chemistry …
solvation modeling. We will discuss the insights (and limitations) of these solvation models …
solvation modeling. We will discuss the insights (and limitations) of these solvation models …
Computations of absolute solvation free energies of small molecules using explicit and implicit solvent model
… solvation models are particularly appealing because of their ability to accurately reproduce
solvation in … The last term represents the standard 12-6 Lennard-Jones potential used to …
solvation in … The last term represents the standard 12-6 Lennard-Jones potential used to …
Predicting solvation free energies using parameter-free solvent models
… for computing solvation free energies in apolar solvents. Approximating solvents as
Lennard-Jones spheres and using atomistic solute models, we managed to obtain solvation free …
Lennard-Jones spheres and using atomistic solute models, we managed to obtain solvation free …
Non-zero Lennard-Jones parameters for the Toukan–Rahman water model: more accurate calculations of the solvation free energy of organic substances
A Nikitin - Journal of Computer-Aided Molecular Design, 2020 - Springer
… -mechanical models of hydrogen bonding improves the estimate of the solvation free energy
of … showed that using the same Lennard-Jones hydrogen parameters for the hydroxyl, …
of … showed that using the same Lennard-Jones hydrogen parameters for the hydroxyl, …
A modified TIP3P water potential for simulation with Ewald summation
DJ Price, CL Brooks III - The Journal of chemical physics, 2004 - pubs.aip.org
… models of choice for Monte Carlo MC and molecular dynamics MD simulations of explicitly
solvated … of a Coulomb and 12-6 Lennard-Jones potential that is compatible with a number of …
solvated … of a Coulomb and 12-6 Lennard-Jones potential that is compatible with a number of …
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