Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment

MH Rau, RL Marvig, GD Ehrlich… - Environmental …, 2012 - Wiley Online Library
… previously reported for early stage host adaptation. Uptake of novel … host adaptation is
characterized by the reduction of genomic … the complete genome of this highly adapted pathogenic …

Genome degeneration and adaptation in a nascent stage of symbiosis

KF Oakeson, R Gil, AL Clayton, DM Dunn… - Genome biology and …, 2014 - academic.oup.com
… 1) that has a genome consisting of one circular chromosome of 4,513,140 bases with an
average GC content of 56.06%. A total of 4,080 candidate protein-coding sequences (CDSs) …

Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation

MM Sheffer, A Hoppe, H Krehenwinkel, G Uhl… - …, 2021 - academic.oup.com
… in the genome can play as drivers of adaptation and speciation… environments may well set
the stage for species formation [14]. … into the repeat content in genomes of additional arthropod …

[HTML][HTML] Developmental stage related patterns of codon usage and genomic GC content: searching for evolutionary fingerprints with models of stem cell differentiation

L Ren, G Gao, D Zhao, M Ding, J Luo, H Deng - Genome Biology, 2007 - Springer
stage-related patterns of gene expression are correlated with codon usage (GC3) and GCg
content … selection at synonymous sites in the mouse genome and novel clues for linking the …

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

SP Flanagan, BR Forester, EK Latch… - Evolutionary …, 2018 - Wiley Online Library
Stage 2 outlines the initial planning phase, stages 3 and 4 are the genomic assessment, and
stages 5 and 6 are the genomic … As total gene content does not vary as much as genome

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

J Prunier, JP Verta, JJ MacKay - New Phytologist, 2016 - Wiley Online Library
… and the functional implications at the level of gene coding content. Second, we review … the
genomics of adaptation, exploring two research themes: (1) the genomic basis of adaptation in …

Genome-Wide Regulatory Adaptation Shapes Population-Level Genomic Landscapes in Heliconius

JJ Lewis, RD Reed - Molecular biology and evolution, 2019 - academic.oup.com
… driving population genomic divergence, such as natural selection, and that this difference
is overall more pronounced at the mid-pupal patterning stage than during the late-pupal stage

Rapid phenotypic evolution with shallow genomic differentiation during early stages of high elevation adaptation in Eurasian Tree Sparrows

Y Qu, C Chen, Y Xiong, H She, YE Zhang… - National science …, 2020 - academic.oup.com
… into the early stage of high elevation adaptation where polygenic adaptation appears to drive
… of ∼20%, latter of which is the content of oxygen content at sea level). All animal protocols …

[HTML][HTML] Developmental and environmental variation in genomes

XQ Li - heredity, 2009 - nature.com
… This article reviews such variations in genome size or DNA content (excluding ploidy-level …
it is unnecessary at the plant growth stage. The DNA content in DH plants tends to return to …

Genomics of Ecological Adaptation in Cactophilic Drosophila

Y Guillén, N Rius, A Delprat, A Williford… - Genome biology and …, 2015 - academic.oup.com
… the genome and developmental transcriptome of D. buzzatii and compared its gene content
… levels and transcript annotations for each developmental stage, and for repeat annotations. …