[HTML][HTML] STRetch: detecting and discovering pathogenic short tandem repeat expansions

H Dashnow, M Lek, B Phipson, A Halman, S Sadedin… - Genome biology, 2018 - Springer
… For six of the ten samples we had information about the disease and the estimated allele size
Disease and allele size estimates were only revealed to us after we had correctly identified …

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing

K Doi, T Monjo, PH Hoang, J Yoshimura… - …, 2014 - academic.oup.com
… by or associated with short tandem repeats (STRs), repetitive … of repeat expansion, unusual
structural features of repeat-… samples, the repeat expansion was present in one allele, but …

Effect of Repeat Copy Number on Variable-Number Tandem Repeat Mutations in Escherichia coli O157:H7

AJ Vogler, C Keys, Y Nemoto, RE Colman… - Journal of …, 2006 - Am Soc Microbiol
… Variable-number tandem repeats (VNTRs) represent some of … as repeat units or motifs) that
are repeated in tandem and … alleles to verify that detected mutations were due to changes in …

Interleukin 6–174 G/C promoter and variable number of tandem repeats (VNTR) gene polymorphisms in sporadic Alzheimer's disease

C Capurso, V Solfrizzi, AM Colacicco… - Progress in Neuro …, 2010 - Elsevier
… C/G polymorphism and Alzheimer's disease (AD) have yielded conflicting results. Furthermore,
the C allele of the IL-6 variable number of tandem repeats (VNTR) polymorphism was …

Clinical aspects of CAG repeat diseases

MA Nance - Brain pathology, 1997 - Wiley Online Library
… The gaps between normal and disease allele sizes are also notably different among the
different disorders (Figure l), suggesting that different mechs nisms of mutagenesis and …

Tandemly repeated DNA: why should anyone care?

JAL Armour - … Research/Fundamental and Molecular Mechanisms of …, 2006 - Elsevier
… In this commentary, I make the case for studying tandem repeats, concentrating on two …
rich information available at multi-allelic tandem repeat loci, nearly all SNPs are merely bi-allelic. …

Standardisation of multiplex fluorescent short tandem repeat analysis for chimerism testing

F Nollet, J Billiet, D Selleslag, A Criel - Bone marrow transplantation, 2001 - nature.com
… Variable number of tandem repeats (VNTRs) were shown to be most useful because of their
high probability of being informative as they consist of multiple alleles allowing simplicity of …

Novel association analysis between 9 short tandem repeat loci polymorphisms and coronary heart disease based on a cross-validation design

L Hui, Y Jing, M Rui, Y Weijian - Atherosclerosis, 2011 - Elsevier
… CHD group and the control population for three alleles, and also statistical differences in
the age at first onset of CHD for two alleles; at least one allele, D21S11-28.2, was statistically …

[PDF][PDF] General approach to analysis of polymorphic short tandem repeat loci

CJ Sprecher, C Puers, AM Lins, JW Schumm - BioTechniques, 1996 - Citeseer
… such as detection of variable number of tandem repeat (VNTR) loci either by … allele
represent number of repeats within the allele. Fourteen known alleles are not included in allelic

Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer

SH Choi, S Worswick, HM Byun, T Shear… - … journal of cancer, 2009 - Wiley Online Library
… in mice carrying a hypomorphic allele and a null allele for DNA … such as interspersed repeats
and tandem repeats; combined … DNA methylation of the tandem repeat D4Z4 increased in …