… parameter to describe the structural or topological property of a biological control network. …
The first is the guard cell abscisic acid signaling network in plants (ABA). It was first …

… While without detailed kinetic information a true rate limiting step can not be identified, this
analysis suggests that network topology alone is … Hypothesis generation in signaling networks …

… that demonstrates how the topology and strength of network connections can be retrieved …
signaling network that involves growth factor and stress-activated pathways. For gene networks…

… is just another topology of the reaction-diffusion network that we analyzed for the extended
… IP-signaling and IP (Figure 5a). We used RDNets to identify possible signaling networks that …

… Using principles of scale-free network topology, we propose that fragmenting the gene
expression network via `genome-engineering' may be a viable and practical approach to isolating …

… In the current comparative study, we examine nine popular topology-based pathway analysis
methods that investigate different null hypotheses. Methods considered in this review have …

… This operator has recently been shown to be key to treat dynamics of topological signals of
different dimensions on networks, simplicial and cell complexes [23–25, 50], To illustrate the …

… This review aims to provide an overview of ubiquitin chain topology and associated signaling
pathways and discusses the MS-based proteomic methodologies used to determine such …

… on topology alone work reasonably well for PPI networks, but the input–output dynamics
needs to be taken into consideration when modularizing metabolic or signaling networks with …

… Using the signaling network computational analysis of the Tyr-phosphoproteomic data,
we identified seven topological clusters. We studied cluster 1 containing Fyn, SFK, and Syk …