… We develop in this paper a theoretical framework for the topological study of time series
data. Broadly speaking, we describe geometrical and topological properties of sliding window …

… Our goal is now to analyze and improve the consistency of an IG topology with respect to
a given set of experimental data. Central to all algorithms presented herein is the following …

… The network clearly shows two distinct sub-networks: one is the signaling network of PI3K, …
is the adipogenesis gene set and the network of oxidative phosphorylation, fatty acid and …

… Different from the iterating approaches in [26] and [27], we wish to infer the network topology
through a … Therefore, it is important to explore more ways to improve the topology inference …

… generating shortest paths in protein signaling networks. The algorithm gives preference to
known signaling routes while reconstructing condition-specific networks. Recent work by Yu et…

… reached in the topological analysis of networks, … signaling network with a very high average
closeness is more likely organizing functional units or modules, whereas a signaling network …

… Since cell signaling networks exhibit modular organization, we sought to identify … The
network topology analysis performed in this study revealed a set of central nodes associated to …

… Subnetwork hub analysis We hypothesized that the topology of the JACSs obtained by
MATISSE can provide clues to the key players in the regulation of the cell cycle machinery. To …

… key nodes in a disease-specific network with important topological properties [13, 14]. …
thrombosis molecular network and analyze topological characteristics of the network from several …

… the mutational robustness of the biological networks since they only focused on topological
characteristics. Our results about the topological difference such as degree heterogeneity of …