Multiple quantitative trait analysis using Bayesian networks

M Scutari, P Howell, DJ Balding, I Mackay - Genetics, 2014 - academic.oup.com
… -of-the-art model such as single-trait ENET when predicting traits from SNPs and that they
outperform single-trait GBLUP for the population analyzed in this article. As evidenced by the …

Bayesian Networks Illustrate Genomic and Residual Trait Connections in Maize (Zea mays L.)

K Töpner, GJM Rosa, D Gianola… - G3: Genes, Genomes …, 2017 - academic.oup.com
… to analyze MCMC samples of covariance matrices, we use predicted (fitted) genomic values
and residuals from a multiple-trait … among maize traits and the comparison of networks with …

Genomic Bayesian confirmatory factor analysis and Bayesian network to characterize a wide spectrum of rice phenotypes

H Yu, MT Campbell, Q Zhang, H Walia… - G3: Genes, Genomes …, 2019 - academic.oup.com
… agronomic traits in rice. We used a Bayesian network to depict conditional dependencies
among phenotypes, which can not be obtained by standard multi-trait analysis. We utilized …

Novel bayesian networks for genomic prediction of developmental traits in biomass sorghum

JPR Dos Santos, SB Fernandes… - G3: Genes …, 2020 - academic.oup.com
… genetic information between traits over time allow Bayesian networks to offer … : Bayesian
network (BN), Pleiotropic Bayesian network (PBN), Dynamic Bayesian network (DBN), multi-trait

Application of Bayesian networks for estimation of individual psychological characteristics

A Litvinenko, N Litvinenko, O Mamyrbayev - arXiv preprint arXiv …, 2017 - arxiv.org
Bayesian network (Albert 2009) to find a more accurate overall estimate for each investigated
psychological personality trait (… simple examples with just one trait, the offered technique …

Use of transcriptomic data to inform biophysical models via Bayesian networks

CR Guadagno, D Millar, R Lai, DS Mackay… - Ecological …, 2020 - Elsevier
… observations and tissue collection for RNA-sequencing analysis were performed every four
… used to build the Bayesian network, we focus our attention on traits highly relevant to the …

Modeling multiple phenotypes in wheat using data‐driven genomic exploratory factor analysis and Bayesian network learning

M Momen, M Bhatta, W Hussain, H Yu, G Morota - Plant Direct, 2021 - Wiley Online Library
… a Bayesian network to obtain a trait structure reflecting the genetic interdependency among
traits. Three directed paths were consistently identified by two Bayesian network algorithms. …

Bayesian network structure and predictability of autistic traits

G Briganti, DR Williams, J Mulder… - Psychological …, 2022 - journals.sagepub.com
network methodology to autistic traits. The aim of the present work is therefore to perform a
network analysis of the autistic traits … of the AQ with the Bayesian inference methods that have …

Moving toward system genetics through multiple trait analysis in genome-wide association studies

D Shriner - Frontiers in genetics, 2012 - frontiersin.org
Bayesian network consisting of a marker M, traits D directly associated with M, traits I indirectly
associated with M, and traitsBayesian network for a cycle using an underlying Bayesian

A multiple-trait Bayesian variable selection regression method for integrating phenotypic causal networks in genome-wide association studies

Z Wang, D Chapman, G Morota… - G3: Genes, Genomes …, 2020 - academic.oup.com
… a multi-trait Bayesian regression GWAS … traits. In this paper, we develop and implement
a new GWAS method called SEM-Bayesian alphabet, which integrates SEM to the multi-trait